Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF THE HER3 (ERBB3) EXTRACELLULAR DOMAIN
 
Authors :  D. J. Leahy, H. -S. Cho
Date :  15 Jul 02  (Deposition) - 02 Aug 02  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Tyrosine Kinase; Cell Surface Receptor; Immunity, Signaling Protein, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. S. Cho, D. J. Leahy
Structure Of The Extracellular Region Of Her3 Reveals An Interdomain Tether.
Science V. 297 1330 2002
PubMed-ID: 12154198  |  Reference-DOI: 10.1126/SCIENCE.1074611

(-) Compounds

Molecule 1 - RECEPTOR PROTEIN-TYROSINE KINASE ERBB-3
    ChainsA, B
    EC Number2.7.10.1
    EngineeredYES
    Expression SystemCRICETULUS GRISEUS
    Expression System Cell LineLEC1
    Expression System CommonCHINESE HAMSTER
    Expression System PlasmidPSGHV0
    Expression System Taxid10029
    Expression System TissueOVARY CELLS
    Expression System Vector TypePLASMID
    FragmentEXTRACELLULAR DOMAIN
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymGROWTH FACTOR RECEPTOR EXTRACELLULAR DOMAIN;
C-ERBB3

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 18)

Asymmetric Unit (3, 18)
No.NameCountTypeFull Name
1NAG16Ligand/IonN-ACETYL-D-GLUCOSAMINE
2NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 9)
No.NameCountTypeFull Name
1NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
2NDG-1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
3SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (3, 9)
No.NameCountTypeFull Name
1NAG7Ligand/IonN-ACETYL-D-GLUCOSAMINE
2NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
3SO41Ligand/IonSULFATE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:62 , CYS A:227 , ASN A:231 , GLY A:234BINDING SITE FOR RESIDUE NAG A 622
02AC2SOFTWARELEU A:307 , ASN A:334BINDING SITE FOR RESIDUE NAG A 623
03AC3SOFTWAREHIS A:386 , HIS A:388 , ASN A:389 , PRO A:493 , NAG A:625 , HOH A:1045BINDING SITE FOR RESIDUE NAG A 624
04AC4SOFTWARENAG A:624BINDING SITE FOR RESIDUE NAG A 625
05AC5SOFTWAREARG A:372 , ASN A:395BINDING SITE FOR RESIDUE NAG A 626
06AC6SOFTWAREPRO A:385 , HIS A:388 , ASN A:418 , GLN A:442BINDING SITE FOR RESIDUE NAG A 627
07AC7SOFTWAREASN A:450 , THR A:452 , LYS A:453BINDING SITE FOR RESIDUE NAG A 628
08AC8SOFTWAREASN A:503 , THR A:512BINDING SITE FOR RESIDUE NAG A 629
09AC9SOFTWAREASN A:547BINDING SITE FOR RESIDUE NAG A 630
10BC1SOFTWAREARG B:62 , ASN B:231BINDING SITE FOR RESIDUE NAG B 622
11BC2SOFTWAREASN B:334BINDING SITE FOR RESIDUE NAG B 623
12BC3SOFTWAREHIS B:386 , MET B:387 , HIS B:388 , ASN B:389 , PRO B:493 , NAG B:625BINDING SITE FOR RESIDUE NAG B 624
13BC4SOFTWARENAG B:624BINDING SITE FOR RESIDUE NAG B 625
14BC5SOFTWAREPRO B:385 , ASN B:418BINDING SITE FOR RESIDUE NDG B 626
15BC6SOFTWAREASN B:450 , THR B:452 , LYS B:453BINDING SITE FOR RESIDUE NAG B 627
16BC7SOFTWARETYR B:246 , ASN B:247 , LYS B:248 , LEU B:249 , PRO B:255 , LEU B:484 , ASN B:503 , ALA B:577 , LYS B:578 , HOH B:1072BINDING SITE FOR RESIDUE NAG B 628
17BC8SOFTWAREASP B:294 , LYS B:295 , GLU B:302 , ASN B:547 , THR B:553 , CYS B:554 , HOH B:1007BINDING SITE FOR RESIDUE NAG B 629
18BC9SOFTWAREGLN B:7 , HIS B:273 , HIS B:559BINDING SITE FOR RESIDUE SO4 B 5001

(-) SS Bonds  (47, 47)

Asymmetric Unit
No.Residues
1A:10 -A:37
2A:137 -A:164
3A:167 -A:175
4A:171 -A:183
5A:191 -A:199
6A:195 -A:207
7A:208 -A:216
8A:212 -A:224
9A:227 -A:236
10A:240 -A:267
11A:271 -A:282
12A:286 -A:301
13A:304 -A:308
14A:312 -A:335
15A:444 -A:474
16A:481 -A:490
17A:485 -A:498
18A:501 -A:510
19A:514 -A:530
20A:533 -A:546
21A:537 -A:554
22A:557 -A:566
23B:10 -B:37
24B:137 -B:164
25B:167 -B:175
26B:171 -B:183
27B:191 -B:199
28B:195 -B:207
29B:208 -B:216
30B:212 -B:224
31B:227 -B:236
32B:240 -B:267
33B:271 -B:282
34B:286 -B:301
35B:304 -B:308
36B:312 -B:335
37B:444 -B:474
38B:481 -B:490
39B:485 -B:498
40B:501 -B:510
41B:514 -B:530
42B:533 -B:546
43B:537 -B:554
44B:557 -B:566
45B:570 -B:591
46B:594 -B:602
47B:598 -B:610

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ser B:6 -Gln B:7

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (4, 8)

Asymmetric Unit (4, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_042102P30LERBB3_HUMANPolymorphism56017157A/BP11L
2UniProtVAR_042103V104MERBB3_HUMANUnclassified  ---A/BV85M
3UniProtVAR_042104T204IERBB3_HUMANPolymorphism56107455A/BT185I
4UniProtVAR_049710N385SERBB3_HUMANPolymorphism12320176A/BN366S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (4, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_042102P30LERBB3_HUMANPolymorphism56017157AP11L
2UniProtVAR_042103V104MERBB3_HUMANUnclassified  ---AV85M
3UniProtVAR_042104T204IERBB3_HUMANPolymorphism56107455AT185I
4UniProtVAR_049710N385SERBB3_HUMANPolymorphism12320176AN366S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (4, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_042102P30LERBB3_HUMANPolymorphism56017157BP11L
2UniProtVAR_042103V104MERBB3_HUMANUnclassified  ---BV85M
3UniProtVAR_042104T204IERBB3_HUMANPolymorphism56107455BT185I
4UniProtVAR_049710N385SERBB3_HUMANPolymorphism12320176BN366S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1M6B)

(-) Exons   (16, 31)

Asymmetric Unit (16, 31)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002671011aENSE00001182862chr12:56473892-56474166275ERBB3_HUMAN1-28282A:8-9
B:6-9
2
4
1.2ENST000002671012ENSE00001670328chr12:56477535-56477686152ERBB3_HUMAN28-78512A:9-59 (gaps)
B:9-59 (gaps)
51
51
1.3aENST000002671013aENSE00001691214chr12:56478779-56478965187ERBB3_HUMAN79-141632A:60-122
B:60-122
63
63
1.4ENST000002671014ENSE00001607896chr12:56480315-56480440126ERBB3_HUMAN141-183432A:122-164
B:122-164
43
43
1.5ENST000002671015ENSE00001713759chr12:56481361-5648142666ERBB3_HUMAN183-205232A:164-186
B:164-186
23
23
1.6ENST000002671016ENSE00001696674chr12:56481579-56481697119ERBB3_HUMAN205-244402A:186-225
B:186-225
40
40
1.7ENST000002671017ENSE00001784438chr12:56481805-56481946142ERBB3_HUMAN245-292482A:226-273
B:226-273
48
48
1.8ENST000002671018ENSE00001624919chr12:56482327-56482440114ERBB3_HUMAN292-330392A:273-311
B:273-311
39
39
1.9aENST000002671019aENSE00000838658chr12:56482532-56482652121ERBB3_HUMAN330-370412A:311-351
B:311-351
41
41
1.11ENST0000026710111ENSE00001059664chr12:56486531-5648660474ERBB3_HUMAN370-395262A:351-376
B:351-376
26
26
1.12ENST0000026710112ENSE00001143935chr12:56486770-5648686091ERBB3_HUMAN395-425312A:376-406
B:376-406
31
31
1.13aENST0000026710113aENSE00001143926chr12:56487129-56487334206ERBB3_HUMAN425-494702A:406-475
B:406-475
70
70
1.14aENST0000026710114aENSE00001143915chr12:56487548-56487680133ERBB3_HUMAN494-538452A:475-519
B:475-519
45
45
1.15ENST0000026710115ENSE00001143907chr12:56487883-5648797391ERBB3_HUMAN538-568312A:519-549
B:519-549
31
31
1.16ENST0000026710116ENSE00001143899chr12:56488186-56488340155ERBB3_HUMAN569-620522A:550-580
B:550-601
31
52
1.17ENST0000026710117ENSE00001059678chr12:56489041-5648909454ERBB3_HUMAN620-638191-
B:601-611
-
11
1.18ENST0000026710118ENSE00001143884chr12:56489449-56489590142ERBB3_HUMAN638-685480--
1.19ENST0000026710119ENSE00001143876chr12:56490287-56490406120ERBB3_HUMAN686-725400--
1.20ENST0000026710120ENSE00001143869chr12:56490532-5649063099ERBB3_HUMAN726-758330--
1.21ENST0000026710121ENSE00001143859chr12:56490829-56491014186ERBB3_HUMAN759-820620--
1.22ENST0000026710122ENSE00001143850chr12:56491569-56491724156ERBB3_HUMAN821-872520--
1.23ENST0000026710123ENSE00001143842chr12:56492284-5649235976ERBB3_HUMAN873-898260--
1.24bENST0000026710124bENSE00001143833chr12:56492543-56492689147ERBB3_HUMAN898-947500--
1.25ENST0000026710125ENSE00001143824chr12:56493432-5649352998ERBB3_HUMAN947-979330--
1.26ENST0000026710126ENSE00001143816chr12:56493622-56493813192ERBB3_HUMAN980-1043640--
1.27ENST0000026710127ENSE00001143808chr12:56493958-5649402972ERBB3_HUMAN1044-1067240--
1.28ENST0000026710128ENSE00001143800chr12:56494845-56495145301ERBB3_HUMAN1068-11681010--
1.29ENST0000026710129ENSE00001324564chr12:56495313-564971281816ERBB3_HUMAN1168-13421750--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:549
 aligned with ERBB3_HUMAN | P21860 from UniProtKB/Swiss-Prot  Length:1342

    Alignment length:573
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596   
          ERBB3_HUMAN    27 AVCPGTLNGLSVTGDAENQYQTLYKLYERCEVVMGNLEIVLTGHNADLSFLQWIREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVMLNYNTNSSHALRQLRLTQLTEILSGGVYIEKNDKLCHMDTIDWRDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQCAHFRDGPHCVSSCPHGVLGAKGP 599
               SCOP domains d1m6                        ba1 A:8-165 Receptor protein-tyrosine kinase Erbb-3 extracellular domain                                                          d1m6ba3 A:166-310 Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains                                                                       d1m6ba2 A:311-479 Receptor protein-tyrosine kinase Erbb-3 extracellular domain                                                                                           d1m6ba4 A:480-580 Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains                            SCOP domains
               CATH domains 1m6b                        A01 A:8-198 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'. Chain A, domain 1                                                                                 1m6bA02 A:199-308 Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A, domain 2                  1m6bA03 A:309-480 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'. Chain A, domain 1                                                                                    1m6bA04 A:481-580 Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A, domain 2         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.------------------------...ee...eeee.......hhhhhhh.ee...eeee.....eee.....ee....hhhh.eeeeee............eee.....ee...eeeee...........hhhhhh......eeee.............................................................hhhhh.....eee..eee......eee......eee.....eee..eee.......eee..eee......eeeeee..eeeeee.......eee..............hhhhhh...eee..eeehhhhhhh.........hhhhhhhhhhh.ee...eee.........hhhhh...ee.........eeeeee..............ee...eeeee...........hhhhhh.......eeee...hhhhhh..................hhhhh.....ee....ee...........eeee..eeee...........................eee..eee............. Sec.struct. author
                 SAPs(SNPs) ---L-------------------------------------------------------------------------M---------------------------------------------------------------------------------------------------I------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.--------------------------------------------------Exon 1.3a  PDB: A:60-122 UniProt: 79-141                       -----------------------------------------Exon 1.5  PDB: A:164-18---------------------------------------Exon 1.7  PDB: A:226-273 UniProt: 245-292       -----------------------------------------------------------------------------Exon 1.11  PDB: A:351-376 -----------------------------Exon 1.13a  PDB: A:406-475 UniProt: 425-494                           -------------------------------------------Exon 1.15  PDB: A:519-549      Exon 1.16  PDB: A:550-580       Transcript 1 (1)
           Transcript 1 (2) -Exon 1.2  PDB: A:9-59 (gaps) UniProt: 28-78        --------------------------------------------------------------Exon 1.4  PDB: A:122-164 UniProt: 141-183  ---------------------Exon 1.6  PDB: A:186-225                -----------------------------------------------Exon 1.8  PDB: A:273-311               ----------------------------------------------------------------Exon 1.12  PDB: A:376-406      --------------------------------------------------------------------Exon 1.14a  PDB: A:475-519 UniProt: 494-538  ------------------------------------------------------------- Transcript 1 (2)
           Transcript 1 (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9a  PDB: A:311-351                ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (3)
                 1m6b A   8 AVCP------------------------RCEVVMGNLEIVLTGHNADLSFLQWVREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVMLNYNTNSSHALRQLRLTQLTEILSGGVYIEKNDKLCHMDTIDWRDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQCAHFRDGPHCVSSCPHGVLGAKGP 580
                               |     -         -        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577   
                              11                       36                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                

Chain B from PDB  Type:PROTEIN  Length:584
 aligned with ERBB3_HUMAN | P21860 from UniProtKB/Swiss-Prot  Length:1342

    Alignment length:606
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624      
          ERBB3_HUMAN    25 SQAVCPGTLNGLSVTGDAENQYQTLYKLYERCEVVMGNLEIVLTGHNADLSFLQWIREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVMLNYNTNSSHALRQLRLTQLTEILSGGVYIEKNDKLCHMDTIDWRDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQCAHFRDGPHCVSSCPHGVLGAKGPIYKYPDVQNECRPCHENCTQGCKGPELQDCL 630
               SCOP domains d1m6bb1                       B:6-165 Receptor protein-tyrosine kinase Erbb-3 extracellular domain                                                              d1m6bb3 B:166-310 Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains                                                                       d1m6bb2 B:311-479 Receptor protein-tyrosine kinase Erbb-3 extracellular domain                                                                                           d1m6bb4 B:480-611 Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains                                                           SCOP domains
               CATH domains 1m6bB01                       B:6-191 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'. Chain A, domain 1                                                                              1m6bB02 B:192-309 Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A, domain 2                          1m6bB03 B:310-513 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'. Chain A, domain 1                                                                                                                    1m6bB04 B:514-611 Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A, domain 2       CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------------------------------------------------------------Furin-like-1m6bB01 B:150-313                                                                                                                                        --------------------Recep_L_domain-1m6bB03 B:334-455                                                                                          ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------------------------Furin-like-1m6bB02 B:150-313                                                                                                                                        --------------------Recep_L_domain-1m6bB04 B:334-455                                                                                          ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Recep_L_domain-1m6bB05 B:334-455                                                                                          ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Recep_L_domain-1m6bB06 B:334-455                                                                                          ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (4)
         Sec.struct. author ...eee..----------------------...eee..eeee.......hhhhh...ee...eeee.....eee.....ee....hhhh.eeeeee............eee.....ee...eeeee...........hhhhhh......eeee.........hhhhh...................hhhhh.................................eee..eee......eeee....eeee.....eee..eee.......eee..eee......eeeeee..eeeeee.......eee..............hhhhhh...eee..eeehhhhhhh.........hhhhhhhhh...ee...eee.........hhhhh...ee.........eeeeee..............ee...eeeee...........hhhhh........eeee...hhhhhhhhh...............hhhhh.....eee..eee...........eeee..eeee...........................eee..eee....eeee....eeeeee.....eee.................. Sec.struct. author
                 SAPs(SNPs) -----L-------------------------------------------------------------------------M---------------------------------------------------------------------------------------------------I------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) 1.1a--------------------------------------------------Exon 1.3a  PDB: B:60-122 UniProt: 79-141                       -----------------------------------------Exon 1.5  PDB: B:164-18---------------------------------------Exon 1.7  PDB: B:226-273 UniProt: 245-292       -----------------------------------------------------------------------------Exon 1.11  PDB: B:351-376 -----------------------------Exon 1.13a  PDB: B:406-475 UniProt: 425-494                           -------------------------------------------Exon 1.15  PDB: B:519-549      Exon 1.16  PDB: B:550-601 UniProt: 569-620          ---------- Transcript 1 (1)
           Transcript 1 (2) ---Exon 1.2  PDB: B:9-59 (gaps) UniProt: 28-78        --------------------------------------------------------------Exon 1.4  PDB: B:122-164 UniProt: 141-183  ---------------------Exon 1.6  PDB: B:186-225                -----------------------------------------------Exon 1.8  PDB: B:273-311               ----------------------------------------------------------------Exon 1.12  PDB: B:376-406      --------------------------------------------------------------------Exon 1.14a  PDB: B:475-519 UniProt: 494-538  ---------------------------------------------------------------------------------Exon 1.17   Transcript 1 (2)
           Transcript 1 (3) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9a  PDB: B:311-351                -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (3)
                 1m6b B   6 SQAVCPGT----------------------RCEVVMGNLEIVLTGHNADLSFLQWVREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVMLNYNTNSSHALRQLRLTQLTEILSGGVYIEKNDKLCHMDTIDWRDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQCAHFRDGPHCVSSCPHGVLGAKGPIYKYPDVQNECRPCHENCTQGCKGPELQDCL 611
                                   | -         -         -|       45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605      
                                  13                     36                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (2, 6)

Asymmetric Unit

(-) Gene Ontology  (56, 56)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (ERBB3_HUMAN | P21860)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0005088    Ras guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Ras superfamily. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0019838    growth factor binding    Interacting selectively and non-covalently with any growth factor, proteins or polypeptides that stimulate a cell or organism to grow or proliferate.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0038132    neuregulin binding    Interacting selectively and non-covalently with a neuregulin, a member of the EGF family of growth factors.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0046934    phosphatidylinositol-4,5-bisphosphate 3-kinase activity    Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + ATP = a 1-phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate + ADP + 2 H(+).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046982    protein heterodimerization activity    Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0030296    protein tyrosine kinase activator activity    Increases the activity of a protein tyrosine kinase, an enzyme which phosphorylates a tyrosyl phenolic group on a protein.
    GO:0004713    protein tyrosine kinase activity    Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0004888    transmembrane signaling receptor activity    Combining with an extracellular or intracellular signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity or state as part of signal transduction.
biological process
    GO:0038128    ERBB2 signaling pathway    A series of molecular signals initiated by binding of a ligand to a member of the ERBB family of receptors on the surface of a cell, where the signal is transmitted by ERBB2. The pathway ends with regulation of a downstream cellular process, e.g. transcription. ERBB2 receptors are themselves unable to bind to ligands, but act as a signal-amplifying tyrosine kinase within a heterodimeric pair.
    GO:0000165    MAPK cascade    An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell.
    GO:0014037    Schwann cell differentiation    The process in which a relatively unspecialized cell acquires the specialized features of a Schwann cell. Schwann cells are found in the peripheral nervous system, where they insulate neurons and axons, and regulate the environment in which neurons function.
    GO:0021545    cranial nerve development    The process whose specific outcome is the progression of the cranial nerves over time, from its formation to the mature structure. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions.
    GO:0003197    endocardial cushion development    The progression of a cardiac cushion over time, from its initial formation to the mature structure. The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves.
    GO:0097192    extrinsic apoptotic signaling pathway in absence of ligand    A series of molecular signals in which a signal is conveyed from the cell surface to trigger the apoptotic death of a cell. The pathway starts with withdrawal of a ligand from a cell surface receptor, and ends when the execution phase of apoptosis is triggered.
    GO:0007507    heart development    The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
    GO:0007162    negative regulation of cell adhesion    Any process that stops, prevents, or reduces the frequency, rate or extent of cell adhesion.
    GO:0043524    negative regulation of neuron apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process in neurons.
    GO:0051048    negative regulation of secretion    Any process that stops, prevents, or reduces the frequency, rate or extent of the controlled release of a substance from a cell or a tissue.
    GO:0009968    negative regulation of signal transduction    Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction.
    GO:0051402    neuron apoptotic process    Any apoptotic process in a neuron, the basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system.
    GO:0018108    peptidyl-tyrosine phosphorylation    The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine.
    GO:0007422    peripheral nervous system development    The process whose specific outcome is the progression of the peripheral nervous system over time, from its formation to the mature structure. The peripheral nervous system is one of the two major divisions of the nervous system. Nerves in the PNS connect the central nervous system (CNS) with sensory organs, other organs, muscles, blood vessels and glands.
    GO:0014065    phosphatidylinositol 3-kinase signaling    A series of reactions within the signal-receiving cell, mediated by the intracellular phosphatidylinositol 3-kinase (PI3K). Many cell surface receptor linked signaling pathways signal through PI3K to regulate numerous cellular functions.
    GO:0046854    phosphatidylinositol phosphorylation    The process of introducing one or more phosphate groups into a phosphatidylinositol, any glycerophosphoinositol having one phosphatidyl group esterified to one of the hydroxy groups of inositol.
    GO:0048015    phosphatidylinositol-mediated signaling    A series of molecular signals in which a cell uses a phosphatidylinositol-mediated signaling to convert a signal into a response. Phosphatidylinositols include phosphatidylinositol (PtdIns) and its phosphorylated derivatives.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0070886    positive regulation of calcineurin-NFAT signaling cascade    Any process that activates or increases the frequency, rate or extent of signaling via the calcineurin-NFAT signaling cascade.
    GO:0014068    positive regulation of phosphatidylinositol 3-kinase signaling    Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the phosphatidylinositol 3-kinase cascade.
    GO:0061098    positive regulation of protein tyrosine kinase activity    Any process that increases the rate, frequency, or extent of protein tyrosine kinase activity.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:2000145    regulation of cell motility    Any process that modulates the frequency, rate or extent of cell motility.
    GO:0042127    regulation of cell proliferation    Any process that modulates the frequency, rate or extent of cell proliferation.
    GO:0014066    regulation of phosphatidylinositol 3-kinase signaling    Any process that modulates the frequency, rate or extent of signal transduction mediated by the phosphatidylinositol 3-kinase cascade.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0007169    transmembrane receptor protein tyrosine kinase signaling pathway    A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0042060    wound healing    The series of events that restore integrity to a damaged tissue, following an injury.
cellular component
    GO:0016324    apical plasma membrane    The region of the plasma membrane located at the apical end of the cell.
    GO:0016323    basolateral plasma membrane    The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0016328    lateral plasma membrane    The portion of the plasma membrane at the lateral side of the cell. In epithelial cells, lateral plasma membranes are on the sides of cells which lie at the interface of adjacent cells.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0043235    receptor complex    Any protein complex that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NDG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ser B:6 - Gln B:7   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1m6b
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  ERBB3_HUMAN | P21860
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.7.10.1
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  ERBB3_HUMAN | P21860
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ERBB3_HUMAN | P218602l9u 3kex 3lmg 3p11 4leo 4otw 4p59 4riw 4rix 4riy 5cus

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1M6B)