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(-) Description

Title :  STRUCTURE OF HUMAN HASPIN IN COMPLEX WITH HISTONE H3 SUBSTRATE
 
Authors :  A. Chaikuad, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, C. Bountra, Structural Genomics Consortium (Sgc)
Date :  15 Feb 14  (Deposition) - 16 Apr 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Structural Genomics Consortium, Sgc, Transferase, Histone, Kinase Substrate Complex, Chromatin Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Maiolica, M. De Medina-Redondo, E. M. Schoof, A. Chaikuad, F. Villa, M. Gatti, S. Jeganathan, H. J. Lou, K. Novy, S. Hauri, U. H. Toprak, F. Herzog, P. Meraldi, L. Penengo, B. E. Turk, S. Knapp, R. Linding, R. Aebersold
Modulation Of The Chromatin Phosphoproteome By The Haspin Protein Kinase.
Mol Cell Proteomics V. 13 1724 2014
PubMed-ID: 24732914  |  Reference-DOI: 10.1074/MCP.M113.034819

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE HASPIN
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNIC28-BSA4
    Expression System Strain: BL21-DE3-R3-PRARE2
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 465-798
    Gene: GSG2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GERM CELL-SPECIFIC GENE 2 PROTEIN, H-HASPIN, HAPLOID GERM CELL-SPECIFIC NUCLEAR PROTEIN KINASE
 
Molecule 2 - HISTONE H3.2
    Chains: B
    Engineered: YES
    Fragment: HISTONE H3 TAIL, UNP RESIDUES 2-13
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HISTONE H3/M, HISTONE H3/O
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric/Biological Unit (4, 9)
No.NameCountTypeFull Name
15ID1Ligand/Ion(2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL
2EDO6Ligand/Ion1,2-ETHANEDIOL
3IOD1Ligand/IonIODIDE ION
4NA1Ligand/IonSODIUM ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:554 , PHE A:556 , SER A:684 , HOH A:1107 , HOH A:1108BINDING SITE FOR RESIDUE NA A 801
2AC2SOFTWAREILE A:610 , MET A:615 , LEU A:657 , HOH A:1125 , HOH A:1133BINDING SITE FOR RESIDUE EDO A 802
3AC3SOFTWARETHR A:553 , GLY A:555 , GLN A:631 , SER A:635 , GLN A:682 , HOH A:1045 , HOH A:1143BINDING SITE FOR RESIDUE EDO A 803
4AC4SOFTWARELEU A:520 , PHE A:593BINDING SITE FOR RESIDUE EDO A 804
5AC5SOFTWAREGLU A:728 , TYR A:739 , HOH A:1016 , HOH A:1167BINDING SITE FOR RESIDUE EDO A 805
6AC6SOFTWAREPHE A:475 , GLY A:567 , SER A:568 , HOH A:923 , HOH A:931BINDING SITE FOR RESIDUE EDO A 806
7AC7SOFTWARELYS A:761 , CYS A:762 , LYS A:771 , HOH A:1177 , HOH A:1293BINDING SITE FOR RESIDUE EDO A 807
8AC8SOFTWAREILE A:490 , GLY A:491 , GLU A:492 , VAL A:498 , ALA A:509 , PHE A:605 , GLU A:606 , PHE A:607 , GLY A:608 , GLY A:609 , ASP A:611 , GLY A:653 , LEU A:656 , ILE A:686 , IOD A:809 , HOH A:912 , HOH A:951 , HOH A:1130BINDING SITE FOR RESIDUE 5ID A 808
9AC9SOFTWARELYS A:511 , PHE A:605 , ASP A:687 , 5ID A:808BINDING SITE FOR RESIDUE IOD A 809

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OUC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OUC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OUC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OUC)

(-) Exons   (0, 0)

(no "Exon" information available for 4OUC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:329
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eehhhhhhhhhhhh.eeeeee..eeeeeeee..eeeeeeeeee............hhhhhhhhhhhhhhhhhh.............eeeeeeee...hhhhhhhhhhhhhhh..............eeeeeeee...ee.........hhhhhhhhhhhhhhhhhhhhhhhh..........eeeee....eeeeee..eeeeee...eeeee.......eee..eee......hhhhhh...hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ouc A 470 KGPVPFSHCLPTEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFSSATDLLCQHSLFK 798
                                   479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789         


Chain B from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 4ouc B   1 ARTKQTA   7
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OUC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OUC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OUC)

(-) Gene Ontology  (36, 39)

Asymmetric/Biological Unit(hide GO term definitions)

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  4ouc
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        H32_HUMAN | Q71DI3: 2iij 2x4w 2x4x 2x4y 3av1 3db3 3mo8 3qo2 3r93 4mzf 4mzg 4mzh 5b0y 5b0z 5b40 5bo0 5ciu 5vac
        HASP_HUMAN | Q8TF76: 2vuw 2wb8 3dlz 3e7v 3f2n 3fmd 3iq7 4qtc 5htb 5htc

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4OUC)