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(-) Description

Title :  CRYSTAL STRUCTURE OF HEPATIS C VIRUS PROTEASE (NS3) COMPLEXED WITH BMS-605339 AKA N-(TERT-BUTOXYCARBONYL)-3-ME THYL-L-VALYL-(4R)-N-((1R, 2S)-1-((CYCLOPROPYLSULFONYL)CARBA MOYL)-2-VINYLCYCLOPROPYL)-4-((6-METHOXY-1-ISOQUINOLINYL)OX Y)-L-PROLINAMIDE
 
Authors :  J. K. Muckelbauer, H. E. Klei
Date :  06 Dec 13  (Deposition) - 26 Mar 14  (Release) - 26 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.62
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase/Hydrolase Inhibitor, Serine Protease, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. M. Scola, A. X. Wang, A. C. Good, L. Q. Sun, K. D. Combrink, J. A. Campbell, J. Chen, Y. Tu, N. Sin, B. L. Venables, S. Y. Sit, Y. Chen, A. Cocuzza, D. M. Bilder, S. D'Andrea, B. Zheng, P. Hewawasam, M. Ding, J. Thuring, J. Li, D. Hernandez, F. Yu, P. Falk, G. Zhai, A. K. Sheaffer, C. Chen, M. S. Lee, D. Barry, J. O. Knipe, W. Li, Y. H. Han, S. Jenkins, C. Gesenberg, Q. Gao, M. W. Sinz, K. S. Santone, T. Zvyaga, R. Rajamani, H. E. Klei, R. J. Colonno, D. M. Grasela, E. Hughes, C. Chien, S. Adams, P. C. Levesque, D. Li, J. Zhu, N. A. Meanwell, F. Mcphee
Discovery And Early Clinical Evaluation Of Bms-605339, A Potent And Orally Efficacious Tripeptidic Acylsulfonamide Ns3 Protease Inhibitor For The Treatment Of Hepatitis C Virus Infection.
J. Med. Chem. V. 57 1708 2014
PubMed-ID: 24555570  |  Reference-DOI: 10.1021/JM401840S
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HCV NS3 1A PROTEASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: HEPATITIS C VIRUS
    Organism Taxid: 31646
    Other Details: THE PROTEIN CRYSTALLIZED IS A SINGLE-CHAIN CONSTRUCT OF PROTEASE DOMAIN OF HEPATITIS C VIRUS NS3/4A, WITH COFACTOR 4A COVALENTLY LINKED AT THE N-TERMINUS.
    Strain: 1A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 10)

Asymmetric/Biological Unit (4, 10)
No.NameCountTypeFull Name
12R81Ligand/IonN-(TERT-BUTOXYCARBONYL)-3-METHYL-L-VALYL-(4R)-N-{(1R,2S)-1-[(CYCLOPROPYLSULFONYL)CARBAMOYL]-2-ETHENYLCYCLOPROPYL}-4-[(6-METHOXYISOQUINOLIN-1-YL)OXY]-L-PROLINAMIDE
2GOL7Ligand/IonGLYCEROL
3SO41Ligand/IonSULFATE ION
4ZN1Ligand/IonZINC ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:41 , PHE A:43 , HIS A:57 , GLY A:58 , ASP A:79 , ASP A:81 , HIS A:110 , ASP A:112 , ARG A:130 , PRO A:131 , ILE A:132 , TYR A:134 , LEU A:135 , LYS A:136 , GLY A:137 , SER A:138 , SER A:139 , PHE A:154 , ARG A:155 , ALA A:156 , ALA A:157 , GOL A:305 , GOL A:309 , GOL A:310 , HOH A:457BINDING SITE FOR RESIDUE 2R8 A 301
02AC2SOFTWARECYS A:97 , CYS A:99 , CYS A:145 , HIS A:149BINDING SITE FOR RESIDUE ZN A 302
03AC3SOFTWARETHR A:10 , ARG A:11 , GLY A:12 , GLY A:15 , ARG A:117 , ARG A:119 , HOH A:426 , HOH A:450 , HOH A:558BINDING SITE FOR RESIDUE SO4 A 303
04AC4SOFTWARESER A:66 , VAL A:71 , GLN A:86 , ALA A:87 , PRO A:88 , HOH A:417 , HOH A:468 , HOH A:476 , HOH A:539BINDING SITE FOR RESIDUE GOL A 304
05AC5SOFTWARETHR A:42 , GLY A:137 , 2R8 A:301 , GOL A:310 , HOH A:458BINDING SITE FOR RESIDUE GOL A 305
06AC6SOFTWAREGLY A:60 , THR A:61 , ARG A:62 , PRO A:129 , HOH A:437 , HOH A:447 , HOH A:469 , HOH A:487 , HOH A:494BINDING SITE FOR RESIDUE GOL A 306
07AC7SOFTWARETHR A:22 , GLY A:120 , ASP A:121 , SER A:122 , HOH A:520BINDING SITE FOR RESIDUE GOL A 307
08AC8SOFTWARELEU A:0 , GLY A:2 , ASP A:3 , ALA A:5 , HOH A:547BINDING SITE FOR RESIDUE GOL A 308
09AC9SOFTWARESER A:133 , TYR A:134 , 2R8 A:301 , HOH A:432 , HOH A:463 , HOH A:561BINDING SITE FOR RESIDUE GOL A 309
10BC1SOFTWAREGLN A:41 , SER A:128 , ARG A:130 , LYS A:136 , 2R8 A:301 , GOL A:305 , HOH A:451 , HOH A:457 , HOH A:458BINDING SITE FOR RESIDUE GOL A 310

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NWK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NWK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NWK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NWK)

(-) Exons   (0, 0)

(no "Exon" information available for 4NWK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                            
               SCOP domains d4nwka_ A: automated matches                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee......eeee..hhhhhhhhhhhh.........eeeee....eeeeeee..eeeeehhhhh..............eee....eeeee................eeeee.....eeeeeeee..eeeeeeeehhhhhh.....eee.....eeeeeeeeeee..eeeeeeeee.hhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nwk A -10 GSVVIVGRINLSGDTAYAQQTRGEEGCQETSQTGRDKNQVEGEVQIVSTATQTFLATSINGVLWTVYHGAGTRTIASPKGPVTQMYTNVDKDLVGWQAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVESLET 177
                                    -1         9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NWK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NWK)

(-) Gene Ontology  (31, 31)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A8DG50_9HEPC | A8DG50: 5voj 5vp9
UniProtKB/TrEMBL
        A8DG50_9HEPC | A8DG50: 3m5l 3m5m 3m5n 3m5o 3rc6 3su0 3su1 3su2 3su3 3su4 3su5 3su6 3sud 3sue 3suf 3sug 3sv6 3sv7 3sv8 3sv9 4nwl 4wh6 4wh8

(-) Related Entries Specified in the PDB File

4nwl