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(-) Description

Title :  CRYSTAL STRUCTURE OF HCV NS3/4A PROTEASE IN COMPLEX WITH AM-07, AN ANALOGUE OF 5172-MCP1P3
 
Authors :  A. N. Matthew, C. A. Schiffer
Date :  04 May 17  (Deposition) - 21 Jun 17  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.86
Chains :  Asym./Biol. Unit :  A
Keywords :  Ns3/4A Protease, Hepatitis C Virus, Drug Resistance, Protease Inhibitor, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. N. Matthew, J. Zephyr, C. J. Hill, M. Jahangir, A. Newton, C. J. Petropoulos, W. Huang, N. Kurt Yilmaz, C. A. Schiffer, A. Ali
Hepatitis C Virus Ns3/4A Protease Inhibitors Incorporating Flexible P2 Quinoxalines Target Drug Resistant Viral Variants.
J. Med. Chem. 2017
PubMed-ID: 28594175  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.7B00426

(-) Compounds

Molecule 1 - NS4A COFACTOR -- NS3 PROTEIN CHIMERA
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET-28A
    Expression System StrainBL21(DE3) MAGIC
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    Organism ScientificHEPATITIS C VIRUS SUBTYPE 1A
    Organism Taxid31646

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
19H71Ligand/IonTERT-BUTYL [(2R,6S,12Z,13AS,14AR,16AS)-14A-[(CYCLOPROPYLSULFONYL)CARBAMOYL]-5,16-DIOXO-2-{[3-(THIOPHEN-2-YL)QUINOXALIN-2-YL]OXY}-1,2,3,5,6,7,8,9,10,11,13A,14,14A,15,16,16A-HEXADECAHYDROCYCLOPROPA[E]PYRROLO[1,2-A][1,4]DIAZACYCLOPENTADECIN-6-YL]CARBAMATE
2SO41Ligand/IonSULFATE ION
3ZN1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:1041 , PHE A:1043 , TYR A:1056 , HIS A:1057 , GLY A:1058 , ASP A:1081 , ARG A:1123 , LEU A:1135 , LYS A:1136 , GLY A:1137 , SER A:1138 , SER A:1139 , PHE A:1154 , ARG A:1155 , ALA A:1156 , ALA A:1157 , ASP A:1168 , SO4 A:1202 , HOH A:1312 , HOH A:1380 , HOH A:1385binding site for residue 9H7 A 1201
2AC2SOFTWARETYR A:1006 , GLN A:1008 , TYR A:1056 , 9H7 A:1201 , HOH A:1312 , HOH A:1353 , HOH A:1354 , HOH A:1382binding site for residue SO4 A 1202
3AC3SOFTWARECYS A:1097 , CYS A:1099 , CYS A:1145 , HIS A:1149binding site for residue ZN A 1203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5VP9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5VP9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VP9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VP9)

(-) Exons   (0, 0)

(no "Exon" information available for 5VP9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeeeeee......eeee..hhhhhhhhhhhh.........eeeee....eeeeeee..eeeehhhhhh..............eee....eeeee................eeeee.....eeeeee....eeeeeeeee.hhh......eee.....eeeeeeeeeee..eeeeeeeeehhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5vp9 A  983 MASMKKKGSVVIVGRINLSGDTAYAQQTRGEEGCQETSQTGRDKNQVEGEVQIVSTATQTFLATSINGVLWTVYHGAGTRTIASPKGPVTQMYTNVDKDLVGWQAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVSTRGVAKAVDFIPVESLETTMR 1180
                                   992      1002      1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172        

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VP9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5VP9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5VP9)

(-) Gene Ontology  (31, 31)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A8DG50_9HEPC | A8DG505voj
UniProtKB/TrEMBL
        A8DG50_9HEPC | A8DG503m5l 3m5m 3m5n 3m5o 3rc6 3su0 3su1 3su2 3su3 3su4 3su5 3su6 3sud 3sue 3suf 3sug 3sv6 3sv7 3sv8 3sv9 4nwk 4nwl 4wh6 4wh8

(-) Related Entries Specified in the PDB File

5voj