4NWL - JenaLib

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Title :   CRYSTAL STRUCTURE OF HEPATIS C VIRUS PROTEASE (NS3) COMPLEXED WITH BMS-650032 AKA N-(TERT-BUTOXYCARBONYL)-3-ME THYL-L-VALYL-(4R)-4-((7-CHLORO-4-METHOXY-1-ISOQUINOLINYL)O XY)-N-((1R,2S)-1-((CYCLOPROPYLSULFONYL)CARBAMOYL)-2-VINYLC YCLOPROPYL)-L-PROLINAMIDE

Authors :   J. K. Muckelbauer, H. E. Klei

Date :   06 Dec 13 (Deposition) - 26 Mar 14 (Release) - 25 Nov 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Hydrolase/Hydrolase Inhibitor, Serine Protease, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. M. Scola, A. X. Wang, A. C. Good, L. Q. Sun, K. D. Combrink, J. A. Campbell, J. Chen, Y. Tu, N. Sin, B. L. Venables, S. Y. Sit, Y. Chen, A. Cocuzza, D. M. Bilder, S. D'Andrea, B. Zheng, P. Hewawasam, M. Ding, J. Thuring, J. Li, D. Hernandez, F. Yu, P. Falk, G. Zhai, A. K. Sheaffer, C. Chen, M. S. Lee, D. Barry, J. O. Knipe, W. Li, Y. H. Han, S. Jenkins, C. Gesenberg, Q. Gao, M. W. Sinz, K. S. Santone, T. Zvyaga, R. Rajamani, H. E. Klei, R. J. Colonno, D. M. Grasela, E. Hughes, C. Chien, S. Adams, P. C. Levesque, D. Li, J. Zhu, N. A. Meanwell, F. Mcphee
Discovery And Early Clinical Evaluation Of Bms-605339, A Potent And Orally Efficacious Tripeptidic Acylsulfonamide Ns3 Protease Inhibitor For The Treatment Of Hepatitis C Virus Infection.
J. Med. Chem. V. 57 1708 2014
PubMed-ID: 24555570 | Reference-DOI: 10.1021/JM401840S
(for further references see the PDB file header)

Molecule 1 - HCV NS3 1A PROTEASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	HEPATITIS C VIRUS
	Organism Taxid	:	31646
	Other Details	:	THE PROTEIN CRYSTALLIZED IS A SINGLE-CHAIN CONSTRUCT OF PROTEASE DOMAIN OF HEPATITIS C VIRUS NS3/4A, WITH COFACTOR 4A COVALENTLY LINKED AT THE N-TERMINUS.
	Strain	:	1A

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 4)

No.	Name	Count	Type	Full Name
1	2R9	2	Ligand/Ion	N-(TERT-BUTOXYCARBONYL)-3-METHYL-L-VALYL-(4R)-4-[(7-CHLORO-4-METHOXYISOQUINOLIN-1-YL)OXY]-N-{(1R,2S)-1-[(CYCLOPROPYLSULFONYL)CARBAMOYL]-2-ETHENYLCYCLOPROPYL}-L-PROLINAMIDE
2	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	2R9	1	Ligand/Ion	N-(TERT-BUTOXYCARBONYL)-3-METHYL-L-VALYL-(4R)-4-[(7-CHLORO-4-METHOXYISOQUINOLIN-1-YL)OXY]-N-{(1R,2S)-1-[(CYCLOPROPYLSULFONYL)CARBAMOYL]-2-ETHENYLCYCLOPROPYL}-L-PROLINAMIDE
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	2R9	1	Ligand/Ion	N-(TERT-BUTOXYCARBONYL)-3-METHYL-L-VALYL-(4R)-4-[(7-CHLORO-4-METHOXYISOQUINOLIN-1-YL)OXY]-N-{(1R,2S)-1-[(CYCLOPROPYLSULFONYL)CARBAMOYL]-2-ETHENYLCYCLOPROPYL}-L-PROLINAMIDE
2	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:43 , HIS A:57 , VAL A:78 , ASP A:81 , LEU A:135 , LYS A:136 , GLY A:137 , SER A:139 , PHE A:154 , ARG A:155 , ALA A:156 , ALA A:157 , VAL A:158 , CYS A:159 , ASP A:168 , HOH A:410 , HOH A:436 , HOH A:446 , TYR B:6 , ALA B:7 , GLN B:8	BINDING SITE FOR RESIDUE 2R9 A 301
2	AC2	SOFTWARE	CYS A:97 , CYS A:99 , CYS A:145 , HIS A:149	BINDING SITE FOR RESIDUE ZN A 302
3	AC3	SOFTWARE	ARG A:-3 , TYR A:6 , ALA A:7 , GLN A:8 , PHE B:43 , TYR B:56 , HIS B:57 , GLY B:58 , VAL B:78 , ASP B:79 , ASP B:81 , LEU B:135 , LYS B:136 , GLY B:137 , SER B:139 , PHE B:154 , ARG B:155 , ALA B:156 , ALA B:157 , CYS B:159 , ASP B:168	BINDING SITE FOR RESIDUE 2R9 B 301
4	AC4	SOFTWARE	CYS B:97 , CYS B:99 , CYS B:145 , HIS B:149	BINDING SITE FOR RESIDUE ZN B 302

(no "SS Bond" information available for 4NWL)

(no "Cis Peptide Bond" information available for 4NWL)

(no "SAP(SNP)/Variant" information available for 4NWL)

(no "PROSITE Motif" information available for 4NWL)

(no "Exon" information available for 4NWL)

Asymmetric Unit

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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains d4nwla_ A: automated matches                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee......eeee....hhhhhhhhhh.........eeeee....eeeeeee..eeeeehhhhh..............eee....eeeee................eeeee.....eeeeee....eeeeeeeeehhhhh.....eee.....eeeeeeeeeee..eeeeeeeeehhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nwl A -11 KGSVVIVGRINLSGDTAYAQQTRGEEGCQETSQTGRDKNQVEGEVQIVSTATQTFLATSINGVLWTVYHGAGTRTIASPKGPVTQMYTNVDKDLVGWQAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVESLETTMRSP 182
                                    -2         8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178

Chain B from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains d4nwlb_ B: automated matches                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee......eeee..hhhhhhhhhhhh.........eeeee....eeeeeee..eeeeehhhhh..............eee....eeeee................eeeee.....eeeeee....eeeeeeeeehhhhh.....eee.....eeeeeeeeeee..eeeeeeeeehhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nwl B -11 KGSVVIVGRINLSGDTAYAQQTRGEEGCQETSQTGRDKNQVEGEVQIVSTATQTFLATSINGVLWTVYHGAGTRTIASPKGPVTQMYTNVDKDLVGWQAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVESLETTMRSP 182
                                    -2         8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

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Class: All beta proteins (24004)

Fold: Trypsin-like serine proteases (1752)

Superfamily: Trypsin-like serine proteases (1752)

Family: Viral proteases (62)

Protein domain: automated matches (23)

Hepatitis C virus subtype 1a [TaxId: 31646] (15)

1a	d4nwla_	A:
1b	d4nwlb_	B:

(no "CATH Domain" information available for 4NWL)

(no "Pfam Domain" information available for 4NWL)

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