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4MZE
Asym. Unit
Info
Asym.Unit (168 KB)
Biol.Unit 1 (159 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HPIV3 HEMAGGLUTININ-NEURAMINIDASE, H552Q/Q559R MUTANT
Authors
:
R. Xu, I. A. Wilson
Date
:
30 Sep 13 (Deposition) - 06 Nov 13 (Release) - 27 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Viral Envelope Protein, Viral Fusion Protein, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Xu, S. G. Palmer, M. Porotto, L. M. Palermo, S. Niewiesk, I. A. Wilson A. Moscona
Interaction Between The Hemagglutinin-Neuraminidase And Fusion Glycoproteins Of Human Parainfluenza Virus Type Iii Regulates Viral Growth In Vivo.
Mbio V. 4 00803 2013
[
close entry info
]
Hetero Components
(9, 45)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
4a: BETA-L-FUCOSE (FULa)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
5e: ALPHA-D-MANNOSE (MANe)
5f: ALPHA-D-MANNOSE (MANf)
5g: ALPHA-D-MANNOSE (MANg)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
7a: DI(HYDROXYETHYL)ETHER (PEGa)
7b: DI(HYDROXYETHYL)ETHER (PEGb)
7c: DI(HYDROXYETHYL)ETHER (PEGc)
7d: DI(HYDROXYETHYL)ETHER (PEGd)
8a: PHOSPHATE ION (PO4a)
8b: PHOSPHATE ION (PO4b)
8c: PHOSPHATE ION (PO4c)
9a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
CA
2
Ligand/Ion
CALCIUM ION
3
EDO
15
Ligand/Ion
1,2-ETHANEDIOL
4
FUL
1
Ligand/Ion
BETA-L-FUCOSE
5
MAN
7
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
8
PO4
3
Ligand/Ion
PHOSPHATE ION
9
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:192 , THR A:193 , GLU A:409 , ARG A:424 , TYR A:530 , HOH A:778 , HOH A:888 , HOH A:904 , HOH A:948 , HOH A:1011
BINDING SITE FOR RESIDUE PO4 A 612
02
AC2
SOFTWARE
ASP A:279 , SER A:282 , GLY A:284 , ALA A:316 , HOH A:764
BINDING SITE FOR RESIDUE CA A 613
03
AC3
SOFTWARE
VAL A:197 , ALA A:259 , LEU A:260 , GLY A:325 , ILE A:326 , TYR A:327 , HOH A:713 , HOH A:980
BINDING SITE FOR RESIDUE EDO A 614
04
AC4
SOFTWARE
TRP A:465 , ASP A:497 , SER A:498 , GLN A:499 , ARG A:515 , PEG A:623
BINDING SITE FOR RESIDUE EDO A 615
05
AC5
SOFTWARE
ARG A:402 , GLN A:403 , ARG A:446 , HOH A:926 , HOH B:934
BINDING SITE FOR RESIDUE EDO A 616
06
AC6
SOFTWARE
TYR A:221 , THR A:246 , ILE A:249 , HOH A:905 , PRO B:176
BINDING SITE FOR RESIDUE EDO A 617
07
AC7
SOFTWARE
GLU A:276 , TYR A:337 , PHE A:372 , MET A:377 , TRP A:406 , GLY A:407 , SER A:408 , THR A:426 , HOH A:758 , HOH A:1030
BINDING SITE FOR RESIDUE EDO A 618
08
AC8
SOFTWARE
MET A:167 , LYS A:168 , THR A:169 , HIS A:342
BINDING SITE FOR RESIDUE EDO A 619
09
AC9
SOFTWARE
GLU A:276 , TYR A:319 , PEG A:622 , HOH A:740
BINDING SITE FOR RESIDUE EDO A 620
10
BC1
SOFTWARE
HOH A:777 , HOH A:970 , ASN B:460 , ASN B:461
BINDING SITE FOR RESIDUE EDO A 621
11
BC2
SOFTWARE
GLN A:215 , ASP A:216 , LYS A:254 , PRO A:272 , EDO A:620 , SO4 A:624 , HOH A:815 , HOH A:864
BINDING SITE FOR RESIDUE PEG A 622
12
BC3
SOFTWARE
ASP A:497 , SER A:498 , GLN A:499 , LYS A:524 , EDO A:615 , HOH A:793 , HOH A:1000
BINDING SITE FOR RESIDUE PEG A 623
13
BC4
SOFTWARE
ARG A:192 , GLN A:215 , PEG A:622
BINDING SITE FOR RESIDUE SO4 A 624
14
BC5
SOFTWARE
ARG B:192 , THR B:193 , GLU B:409 , ARG B:424 , ARG B:502 , TYR B:530 , BMA B:603 , MAN B:604 , HOH B:735 , HOH B:742 , HOH B:895 , HOH B:963 , HOH B:970 , HOH B:973
BINDING SITE FOR RESIDUE PO4 B 610
15
BC6
SOFTWARE
GLN A:552 , LYS A:553 , SER A:554 , LYS B:553 , SER B:554 , HOH B:993
BINDING SITE FOR RESIDUE PO4 B 611
16
BC7
SOFTWARE
ASP B:279 , SER B:282 , GLY B:284 , ALA B:316 , HOH B:749
BINDING SITE FOR RESIDUE CA B 612
17
BC8
SOFTWARE
VAL B:197 , ALA B:259 , LEU B:260 , GLY B:325 , ILE B:326 , TYR B:327 , HOH B:726
BINDING SITE FOR RESIDUE EDO B 613
18
BC9
SOFTWARE
GLY B:330 , LYS B:331 , ILE B:332 , VAL B:384 , HOH B:841
BINDING SITE FOR RESIDUE EDO B 614
19
CC1
SOFTWARE
TRP B:465 , ASP B:497 , GLN B:499 , ARG B:515 , PEG B:620
BINDING SITE FOR RESIDUE EDO B 615
20
CC2
SOFTWARE
ASP A:154 , ARG A:158 , LEU B:261 , ASN B:262 , THR B:263 , ASP B:264
BINDING SITE FOR RESIDUE EDO B 616
21
CC3
SOFTWARE
THR B:487 , SER B:489
BINDING SITE FOR RESIDUE EDO B 617
22
CC4
SOFTWARE
GLU B:276 , HOH B:719
BINDING SITE FOR RESIDUE EDO B 618
23
CC5
SOFTWARE
ASN B:504 , ASN B:523 , LYS B:524 , HOH B:825 , HOH B:909
BINDING SITE FOR RESIDUE EDO B 619
24
CC6
SOFTWARE
SER B:498 , GLN B:499 , VAL B:503 , EDO B:615 , HOH B:784 , HOH B:839 , HOH B:950
BINDING SITE FOR RESIDUE PEG B 620
25
CC7
SOFTWARE
GLU B:276 , TYR B:280 , TYR B:337 , PHE B:372 , TRP B:406 , GLY B:407 , SER B:408 , GLU B:409 , ARG B:424 , THR B:426 , HOH B:853 , HOH B:872
BINDING SITE FOR RESIDUE PEG B 621
26
CC8
SOFTWARE
THR A:302 , ARG A:303 , ASN A:308
BINDING SITE FOR MONO-SACCHARIDE NAG A 601 BOUND TO ASN A 308
27
CC9
SOFTWARE
ASN A:351 , THR A:353 , TRP A:451 , THR A:513 , HOH A:762 , HOH A:839 , HOH A:890 , HOH A:897 , HOH A:936 , HOH A:979 , LYS B:273 , LYS B:305 , ASN B:307 , HOH B:974
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 351 RESIDUES 602 TO 609
28
DC1
SOFTWARE
ASN A:523 , THR A:525
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 523 RESIDUES 610 TO 611
29
DC2
SOFTWARE
ARG B:192 , THR B:302 , ARG B:303 , ASN B:308 , PRO B:458 , GLY B:459 , ASN B:460 , THR B:475 , GLY B:476 , LYS B:500 , ARG B:502 , PO4 B:610 , HOH B:786 , HOH B:850 , HOH B:996
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 308 RESIDUES 601 TO 605
30
DC3
SOFTWARE
ASN B:351 , THR B:353 , TRP B:451 , HOH B:864
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 351 RESIDUES 606 TO 608
31
DC4
SOFTWARE
ASN B:523 , THR B:525
BINDING SITE FOR MONO-SACCHARIDE NAG B 609 BOUND TO ASN B 523
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4mzea_ (A:)
1b: SCOP_d4mzeb_ (B:)
View:
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Label:
Classes
(
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(
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Folds
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Superfamilies
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
automated matches
(38)
Human parainfluenza 3 virus [TaxId: 11217]
(2)
1a
d4mzea_
A:
1b
d4mzeb_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
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