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(-) Description

Title :  STRUCTURE OF THE PHOSPHOPANTETHEINE TRANSFERASE SFP IN COMPLEX WITH COENZYME A AND A PEPTIDYL CARRIER PROTEIN
 
Authors :  P. Tufar, S. Rahighi, F. I. Kraas, D. K. Kirchner, F. Loehr, E. Henrich, J I. Dikic, P. Guentert, M. A. Marahiel, V. Doetsch
Date :  17 Sep 13  (Deposition) - 23 Apr 14  (Release) - 14 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,C
Keywords :  Pcp: Aminoacyl/Peptidyl Carrier, Sfp: Phosphopantetheine Transferase, Sfp: Coenzyme A Binding, Transport Protein-Transferase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Tufar, S. Rahighi, F. I. Kraas, D. K. Kirchner, F. Lohr, E. Henrich, J. Kopke, I. Dikic, P. Guntert, M. A. Marahiel, V. Dotsch
Crystal Structure Of A Pcp/Sfp Complex Reveals The Structural Basis For Carrier Protein Posttranslational Modification.
Chem. Biol. V. 21 552 2014
PubMed-ID: 24704508  |  Reference-DOI: 10.1016/J.CHEMBIOL.2014.02.014

(-) Compounds

Molecule 1 - TYROCIDINE SYNTHASE 3
    ChainsC
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPQE70
    Expression System StrainM15(PREP4)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentPEPTIDYL CARRIER PROTEIN DOMAIN(UNP RESIDUES 3038-3113)
    GeneTYCC
    MutationYES
    Organism ScientificBREVIBACILLUS PARABREVIS
    Organism Taxid54914
    StrainATCC 8185
    SynonymTYROCIDINE SYNTHASE III, ATP-DEPENDENT ASPARAGINE ADENYLASE, ASNA, ASPARAGINE ACTIVASE, ATP-DEPENDENT GLUTAMINE ADENYLASE, GLNA, GLUTAMINE ACTIVASE, ATP-DEPENDENT TYROSINE ADENYLASE, TYRA, TYROSINE ACTIVASE, ATP-DEPENDENT VALINE ADENYLASE, VALA, VALINE ACTIVASE, ATP- DEPENDENT ORNITHINE ADENYLASE, ORNA, ORNITHINE ACTIVASE, ATP- DEPENDENT LEUCINE ADENYLASE, LEUA, LEUCINE ACTIVASE
 
Molecule 2 - 4'-PHOSPHOPANTETHEINYL TRANSFERASE SFP
    ChainsA
    EC Number2.7.8.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPQE60
    Expression System StrainM15(PREP4)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneBSU03570, LPA-8, SFP
    Organism ScientificBACILLUS SUBTILIS SUBSP. SUBTILIS
    Organism Taxid224308
    Strain168
    SynonymSURFACTIN SYNTHASE-ACTIVATING ENZYME

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
1COA1Ligand/IonCOENZYME A
2GOL1Ligand/IonGLYCEROL
3MG2Ligand/IonMAGNESIUM ION
4SO41Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:107 , GLU A:151 , COA A:302 , HOH A:468 , HOH A:469BINDING SITE FOR RESIDUE MG A 301
2AC2SOFTWARELYS A:31 , THR A:44 , TYR A:73 , GLY A:74 , LYS A:75 , PRO A:76 , ASN A:87 , ILE A:88 , SER A:89 , HIS A:90 , ASP A:107 , GLU A:151 , LYS A:155 , GLY A:158 , LYS A:159 , GLY A:160 , LEU A:161 , SER A:162 , MG A:301 , GOL A:303 , MG A:304 , HOH A:402 , HOH A:403 , HOH A:414 , HOH A:441 , HOH A:443 , HOH A:444 , HOH A:468 , HOH A:469 , HOH A:527 , HOH A:529 , HOH A:530 , HOH A:531 , HIS C:44 , ALA C:45 , PHE C:69BINDING SITE FOR RESIDUE COA A 302
3AC3SOFTWARELYS A:28 , ASP A:48 , PHE A:68 , ILE A:88 , COA A:302 , HOH A:444BINDING SITE FOR RESIDUE GOL A 303
4AC4SOFTWAREHIS A:90 , COA A:302 , HOH A:527 , HOH A:528 , HOH A:529BINDING SITE FOR RESIDUE MG A 304
5AC5SOFTWARELYS A:75 , HIS A:85 , HOH A:440BINDING SITE FOR RESIDUE SO4 A 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MRT)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp A:184 -Ser A:185

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MRT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MRT)

(-) Exons   (0, 0)

(no "Exon" information available for 4MRT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..ee.....ee.......eeeeeee..eeeeeee...eeeeeee.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee.....eeee........eeeee.....eeeeeee.........ee.hhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mrt A   1 MKIYGIYMDRPLSQEENERFMTFISPEKREKCRRFYHKEDAHRTLLGDVLVRSVISRQYQLDKSDIRFSTQEYGKPCIPDLPDAHFNISHSGRWVIGAFDSQPIGIDIEKTKPISLEIAKRFFSKTEYSDLLAKDKDEQTDYFYHLWSMKESFIKQEGKGLSLPLDSFSVRLHQDGQVSIELPDSHSPCYIKTYEVDPGYKMAVCAAHPDFPEDITMVSYEELLR 225
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220     

Chain C from PDB  Type:PROTEIN  Length:77
                                                                                                             
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhh...hhhhhhhh.hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 4mrt C   8 YVAPTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHALKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVATR  84
                                    17        27        37        47        57        67        77       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MRT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MRT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MRT)

(-) Gene Ontology  (14, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp A:184 - Ser A:185   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SFP_BACSU | P391351qr0 2ge0 2ge1
        TYCC_BREPA | O304091dny 2gdw 2gdx 2gdy 2ge1 2jgp 2k2q 2md9

(-) Related Entries Specified in the PDB File

1qr0 CRYSTAL STRUCTURE OF THE 4'-PHOSPHOPANTETHEINYL TRANSFERASE SFP-COENZYME A COMPLEX
2ge1 PROTEIN COMPLEX OF A-STATE TYCC3-APO-PCP WITH THE PPTASE SFP (MODEL)
2md9 STRUCTURE OF THE ACITVE SITE MUTANT PEPTIDYL CARRIER PROTEIN TYCC3_PCP