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(-) Description

Title :  SOLUTION STRUCTURE OF AN ACTIVE SITE MUTANT PEPITDYL CARRIER PROTEIN
 
Authors :  P. Tufar, S. Rahighi, F. I. Kraas, D. K. Kirchner, F. Loehr, E. Henrich, J I. Dikic, P. Guentert, M. A. Marahiel, V. Doetsch
Date :  06 Sep 13  (Deposition) - 23 Apr 14  (Release) - 14 May 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Protein, Carrier Protein, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Tufar, S. Rahighi, F. I. Kraas, D. K. Kirchner, F. Lohr, E. Henrich, J. Kopke, I. Dikic, P. Guntert, M. A. Marahiel, V. Dotsch
Crystal Structure Of A Pcp/Sfp Complex Reveals The Structural Basis For Carrier Protein Posttranslational Modification.
Chem. Biol. V. 21 552 2014
PubMed-ID: 24704508  |  Reference-DOI: 10.1016/J.CHEMBIOL.2014.02.014

(-) Compounds

Molecule 1 - TYROCIDINE SYNTHASE 3
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainM15
    Expression System Taxid562
    Expression System VariantPREP4
    Expression System VectorPQE70
    FragmentTHIRD PCP DOMAIN OF TYCC (UNP RESIDUES 3032-3113)
    GeneTYCC
    MutationYES
    Organism ScientificBREVIBACILLUS PARABREVIS
    Organism Taxid54914
    StrainATCC 8185
    SynonymTYROCIDINE SYNTHASE III, ATP-DEPENDENT ASPARAGINE ADENYLASE, ASNA, ASPARAGINE ACTIVASE, ATP-DEPENDENT GLUTAMINE ADENYLASE, GLNA, GLUTAMINE ACTIVASE, ATP-DEPENDENT TYROSINE ADENYLASE, TYRA, TYROSINE ACTIVASE, ATP-DEPENDENT VALINE ADENYLASE, VALA, VALINE ACTIVASE, ATP- DEPENDENT ORNITHINE ADENYLASE, ORNA, ORNITHINE ACTIVASE, ATP- DEPENDENT LEUCINE ADENYLASE, LEUA, LEUCINE ACTIVASE

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2MD9)

(-) Sites  (0, 0)

(no "Site" information available for 2MD9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MD9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MD9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MD9)

(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CARRIERPS50075 Carrier protein (CP) domain profile.TYCC_BREPA965-1040
2002-2077
3040-3115
4075-4150
5119-5194
6162-6237
  1-
-
A:10-83
-
-
-
2PHOSPHOPANTETHEINEPS00012 Phosphopantetheine attachment site.TYCC_BREPA995-1010
2032-2047
3070-3085
4105-4120
5149-5164
6192-6207
  1-
-
A:40-55
-
-
-
NMR Structure * (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CARRIERPS50075 Carrier protein (CP) domain profile.TYCC_BREPA965-1040
2002-2077
3040-3115
4075-4150
5119-5194
6162-6237
  1-
-
A:10-83
-
-
-
2PHOSPHOPANTETHEINEPS00012 Phosphopantetheine attachment site.TYCC_BREPA995-1010
2032-2047
3070-3085
4105-4120
5149-5164
6192-6207
  1-
-
A:40-55
-
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 2MD9)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:90
 aligned with TYCC_BREPA | O30409 from UniProtKB/Swiss-Prot  Length:6486

    Alignment length:171
                                  3041      3051      3061      3071      3081      3091      3101      3111      3121      3131      3141      3151      3161      3171      3181      3191      3201 
          TYCC_BREPA   3032 PVTEAQYVAPTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVATSGKETYVPIEPAPLQEYYPVSSAQKRMYVLRQFADTGTVYNMPSALYIEGDLDRKRFEAAIHGLVERHESLRTSFHTVNGEPVQRVHEH 3202
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhh.................hhhhhhhhhhhhhh......hhhh.....hhhhhhhhh.-----------------------------------------------------------------------.....----------... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------CARRIER  PDB: A:10-83 UniProt: 3040-3115                                    --------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) --------------------------------------PHOSPHOPANTETHEI--------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2md9 A    2 PVTEAQYVAPTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHALKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVAT-----------------------------------------------------------------------RSHHH----------HHH   91
                                    11        21        31        41        51        61        71        81 |       -         -         -         -         -         -         -   |   | -        90 
                                                                                                            83                                                                      84  88         89  

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MD9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MD9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MD9)

(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain A   (TYCC_BREPA | O30409)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016788    hydrolase activity, acting on ester bonds    Catalysis of the hydrolysis of any ester bond.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0031177    phosphopantetheine binding    Interacting selectively and non-covalently with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate).
biological process
    GO:0017000    antibiotic biosynthetic process    The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TYCC_BREPA | O304091dny 2gdw 2gdx 2gdy 2ge1 2jgp 2k2q 4mrt

(-) Related Entries Specified in the PDB File

1dny SOLUTION STRUCTURE OF PCP, A PROTOTYPE FOR THE PEPTIDYL CARRIER DOMAINS OF MODULAR PEPTIDE SNTHETASES RELATED ID: 19479 RELATED DB: BMRB
2gdw SOLUTION STRUCTURE OF THE B. BREVIS TYCC3-PCP IN A/H-STATE
2gdx SOLUTION STRUCTURE OF THE B. BREVIS TYCC3-PCP IN H-STATE
2gdy SOLUTION STRUCTURE OF THE B. BREVIS TYCC3-PCP IN A-STATE
2ge1 PROTEIN COMPLEX OF A-STATE TYCC3-APO-PCP WITH THE PPTASE SFP (MODEL)
4mrt CRYSTAL STRUCTURE OF THE SAME PCP IN COMPLEX WITH SFP