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(-) Description

Title :  CRYSTAL STRUCTURE OF L281D MUTANT OF UDP-GLUCOSE PYROPHOSPHORYLASE FROM LEISHMANIA MAJOR IN COMPLEX WITH UDP-GLC
 
Authors :  J. Fuehring, F. H. Routier, A. -C. Lamerz, P. Baruch, R. Gerardy-Schahn R. Fedorov
Date :  05 Aug 13  (Deposition) - 29 Jan 14  (Release) - 19 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Fuehring, F. H. Routier, A. -C. Lamerz, P. Baruch, R. Gerardy-Schahn, R. Fedorov
Catalytic Mechanism And Allosteric Regulation Of Udp-Glucos Pyrophosphorylase From Leishmania Major
Acs Catalysis V. 6329 2976 2013
PubMed: search  |  Reference-DOI: 10.1021/CS4007777

(-) Compounds

Molecule 1 - UDP-GLUCOSE PYROPHOSPHORYLASE
    Chains: A
    EC Number: 2.7.7.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: LMJF_18_0990, UGP
    Mutation: YES
    Organism Scientific: LEISHMANIA MAJOR
    Organism Taxid: 5664

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1UPG1Ligand/IonURIDINE-5'-DIPHOSPHATE-GLUCOSE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:81 , GLY A:83 , GLY A:84 , MET A:130 , GLN A:162 , GLY A:190 , HIS A:191 , ASN A:219 , GLY A:220 , LYS A:255 , GLY A:256 , GLY A:257 , GLU A:284 , PHE A:305 , ASN A:306 , THR A:307 , ASN A:308 , LYS A:380 , HOH A:2048 , HOH A:2071 , HOH A:2076 , HOH A:2077 , HOH A:2117 , HOH A:2142 , HOH A:2158 , HOH A:2210BINDING SITE FOR RESIDUE UPG A 1001

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:92 -A:92

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4M2B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M2B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M2B)

(-) Exons   (0, 0)

(no "Exon" information available for 4M2B)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:483
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh......hhhhh......ee.hhh....hhhhhhheeeeee....hhhhh...hhhh.eee..eehhhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhh......eee...ee.ee...........hhhh.ee..hhhhhhhhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhh..eeeeeee........eeeee..................eeeee.hhhhhhhhhhhh......eeeeeeeeeehhhhhhhhhhh........eeeeee.........eeeeee.hhhhhhhhh..eeeee.hhhhh....hhhhhhhhhh..eee.....eee.hhhh....eeeehhhhhhhhhhhhhhh.........eeeeeee..ee.....eeeeeeeee.......ee.....eee..ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m2b A   6 KSLSAAAQACVKKMRDAKVNEACIRTFIAQHVMVSKGETGSIPDSAIMPVDSLDALDSLTIECDNAVLQSTVVLKLNGGLGTGMGLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPWLYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDKRVLAYMEKEKIDFLMEVCRRTESDKKGGHLARQTVYVKGKDGQPDAEKRVLDLRESAQCPKADMESFQDINKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMFESASAIVVPRSRFAPVKTCADLLALRSDAYVVTDDFRLVLDDRCHGHPPVVDLDSAHYKMMNGFEKLVQHGVPSLVECKRVTVKGLVQFGAGNVLTGTVTIENTDSASAFVIPDGAKLNDTTASP 488
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M2B)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M2B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M2B)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q4QDU3_LEIMA | Q4QDU3: 2oef 2oeg 4j18 4m28 4m2a

(-) Related Entries Specified in the PDB File

2oef APO-FORM OF THE SAME ENZYME
2oeg THE SAME ENZYME IN COMPLEX WITH THE UDP-GLUCOSE PRODUCT