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(-) Description

Title :  CRYSTAL STRUCTURE OF THE UDP-GLUCOSE PYROPHOSPHORYLASE FROM LEISHMANIA MAJOR IN THE POST-REACTIVE STATE
 
Authors :  J. Fuehring, F. H. Routier, A. -C. Lamerz, P. Baruch, R. Gerardy-Schahn R. Fedorov
Date :  05 Aug 13  (Deposition) - 29 Jan 14  (Release) - 12 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.66
Chains :  Asym./Biol. Unit :  A
Keywords :  Rossmann-Like Alpha/Beta/Alpha Sandwich Fold, Nucleotidyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Fuehring, F. H. Routier, A. -C. Lamerz, P. Baruch, R. Gerardy-Schahn, R. Fedorov
Catalytic Mechanism And Allosteric Regulation Of Udp-Glucos Pyrophosphorylase From Leishmania Major
Acs Catalysis V. 3 2161 2013
PubMed: search  |  Reference-DOI: 10.1021/CS4007777

(-) Compounds

Molecule 1 - UDP-GLUCOSE PYROPHOSPHORYLASE
    Chains: A
    EC Number: 2.7.7.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: LMJF_18_0990, UGP
    Organism Scientific: LEISHMANIA MAJOR
    Organism Taxid: 5664

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2SO41Ligand/IonSULFATE ION
3UPG1Ligand/IonURIDINE-5'-DIPHOSPHATE-GLUCOSE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:81 , ASN A:82 , GLY A:83 , GLY A:84 , MET A:130 , GLN A:162 , GLY A:190 , HIS A:191 , ASN A:219 , GLY A:220 , GLY A:256 , GLY A:257 , GLU A:284 , PHE A:305 , ASN A:306 , ASN A:308 , PHE A:376 , LYS A:380 , MG A:1002 , HOH A:2007 , HOH A:2064 , HOH A:2103 , HOH A:2240 , HOH A:2279 , HOH A:2498 , HOH A:2502 , HOH A:2503 , HOH A:2541 , HOH A:2548 , HOH A:2552 , HOH A:2585BINDING SITE FOR RESIDUE UPG A 1001
2AC2SOFTWAREGLY A:84 , UPG A:1001 , SO4 A:1003 , HOH A:2549BINDING SITE FOR RESIDUE MG A 1002
3AC3SOFTWAREGLY A:84 , LEU A:85 , GLY A:86 , THR A:87 , MG A:1002 , HOH A:2547BINDING SITE FOR RESIDUE SO4 A 1003

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M2A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4M2A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M2A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M2A)

(-) Exons   (0, 0)

(no "Exon" information available for 4M2A)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:483
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh......hhhhh.......hhhhh....hhhhhhheeeeeee...hhhhh...hhhh.eee..eehhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhhhhhh......eee...ee.ee...........hhhh.ee....hhhhhhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhh..eeeeeee........eeeeeeee............eeeeeeee.hhhhhhhhhhhhh.....eeeeeeeeeehhhhhhhhhh.........eeeeee.........eeeeee.hhhhhhhh....eeee.hhhhh....hhhhhhhhhh..eee.....eee.hhhh....eeee......hhhhhhhhh.........eeeeeee..ee.....eeeeeeeee.......ee.....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m2a A   6 KSLSAAAQACVKKMRDAKVNEACIRTFIAQHVMVSKGETGSIPDSAIMPVDSLDALDSLTIECDNAVLQSTVVLKLNGGLGTGMGLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPWLYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDKRVLAYMEKEKIDFLMEVCRRTESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESFQDINKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMFESASAIVVPRSRFAPVKTCADLLALRSDAYVVTDDFRLVLDDRCHGHPPVVDLDSAHYKMMNGFEKLVQHGVPSLVECKRVTVKGLVQFGAGNVLTGTVTIENTDSASAFVIPDGAKLNDTTASP 488
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M2A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M2A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M2A)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Q4QDU3_LEIMA | Q4QDU3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q4QDU3_LEIMA | Q4QDU3: 2oef 2oeg 4j18 4m28 4m2b

(-) Related Entries Specified in the PDB File

2oef APO-FORM OF THE SAME ENZYME
2oeg THE SAME ENZYME IN COMPLEX WITH THE UDP-GLUCOSE PRODUCT
4m28
4m2b