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(-) Description

Title :  OPEN AND CLOSED STRUCTURES OF THE UDP-GLUCOSE PYROPHOSPHORYLASE FROM LEISHMANIA MAJOR
 
Authors :  T. Steiner
Date :  29 Dec 06  (Deposition) - 13 Feb 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Rossmann-Fold, Beta-Helix, Pyrophosphorylase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Steiner, A. C. Lamerz, P. Hess, C. Breithaupt, S. Krapp, G. Bourenkov, R. Huber, R. Gerardy-Schahn, U. Jacob
Open And Closed Structures Of The Udp-Glucose Pyrophosphorylase From Leishmania Major.
J. Biol. Chem. V. 282 13003 2007
PubMed-ID: 17303565  |  Reference-DOI: 10.1074/JBC.M609984200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 2, PUTATIVE
    Chains: A
    EC Number: 2.7.7.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: UGP
    Organism Scientific: LEISHMANIA MAJOR
    Organism Taxid: 5664
    Synonym: UDP-GLUCOSE PYROPHOSPHORYLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 17)

Asymmetric/Biological Unit (2, 17)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE
2UPG1Ligand/IonURIDINE-5'-DIPHOSPHATE-GLUCOSE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:81 , ASN A:82 , GLY A:83 , GLY A:84 , MSE A:130 , GLN A:162 , PRO A:188 , GLY A:190 , HIS A:191 , ASN A:219 , GLY A:220 , GLY A:256 , GLY A:257 , GLU A:284 , PHE A:305 , ASN A:306 , ASN A:308 , PHE A:376 , LYS A:380 , HOH A:5214 , HOH A:5215 , HOH A:5216 , HOH A:5219 , HOH A:5220 , HOH A:5223 , HOH A:5229 , HOH A:5236 , HOH A:5279 , HOH A:5336BINDING SITE FOR RESIDUE UPG A 5206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OEG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OEG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OEG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OEG)

(-) Exons   (0, 0)

(no "Exon" information available for 2OEG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:482
 aligned with Q4QDU3_LEIMA | Q4QDU3 from UniProtKB/TrEMBL  Length:494

    Alignment length:482
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486  
         Q4QDU3_LEIMA     7 SLSAAAQACVKKMRDAKVNEACIRTFIAQHVMVSKGETGSIPDSAIMPVDSLDALDSLTIECDNAVLQSTVVLKLNGGLGTGMGLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPWLYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDKRVLAYMEKEKIDFLMEVCRRTESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESFQDINKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMFESASAIVVPRSRFAPVKTCADLLALRSDAYVVTDDFRLVLDDRCHGHPPVVDLDSAHYKMMNGFEKLVQHGVPSLVECKRVTVKGLVQFGAGNVLTGTVTIENTDSASAFVIPDGAKLNDTTASP 488
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------UDPGP-2oegA01 A:23-459                                                                                                                                                                                                                                                                                                                                                                                                                               ----------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh......hhhhh.......hhhhh....hhhhhhheeeeeee...hhhhh...hhhh.eee..eehhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhhhhhh......eee...ee.ee...........hhhh.ee....hhhhhhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhh..eeeeeee........eeeeeeeeee........eeeeeeeeee.hhhhhhhhhhhhh.....eeeeeeeeeehhhhhhhhhhh........eeeeee.........eeeeee.hhhhhhhh....eeee.hhhhh....hhhhhhhhhh..eee.....eee.hhhh....eeeehhhhhhhhhhhhhhh.........eeeeeee..ee.....eeeeeeeee.......ee.....eee..ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oeg A   7 SLSAAAQACVKKmRDAKVNEACIRTFIAQHVmVSKGETGSIPDSAImPVDSLDALDSLTIECDNAVLQSTVVLKLNGGLGTGmGLCDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFmLmDSFNTSASTKSFLKARYPWLYQVFDSEVELmQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYmFVSNGDNLGATIDKRVLAYmEKEKIDFLmEVCRRTESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADmESFQDINKYSFFNTNNLWIRLPVLLETmQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAmGAAIAmFESASAIVVPRSRFAPVKTCADLLALRSDAYVVTDDFRLVLDDRCHGHPPVVDLDSAHYKmmNGFEKLVQHGVPSLVECKRVTVKGLVQFGAGNVLTGTVTIENTDSASAFVIPDGAKLNDTTASP 488
                                    16  |     26        36 |      46      | 56        66        76        86  |     96       106       116       126 | |   136       146       156    |  166       176       186       196       206       216       226       236       246       256       266       276       286      |296       306       316    |  326       336       346       356     | 366       376       386       396       406       416      |426       436       446       456       466       476       486  
                                       19-MSE             38-MSE         53-MSE                              89-MSE                                128-MSE                          161-MSE                                               215-MSE             235-MSE  244-MSE                                          293-MSE                     321-MSE                            356-MSE |                                                          423-MSE                                                             
                                                                                                                                                     130-MSE                                                                                                                                                                                                                                 362-MSE                                                       424-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2OEG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2OEG)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: GT-A (172)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q4QDU3_LEIMA | Q4QDU3)
molecular function
    GO:0003983    UTP:glucose-1-phosphate uridylyltransferase activity    Catalysis of the reaction: alpha-D-glucose 1-phosphate + UTP = diphosphate + UDP-D-glucose.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0070569    uridylyltransferase activity    Catalysis of the transfer of an uridylyl group to an acceptor.
biological process
    GO:0006011    UDP-glucose metabolic process    The chemical reactions and pathways involving UDP-glucose, uridinediphosphoglucose, a substance composed of glucose in glycosidic linkage with uridine diphosphate.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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 Related Entries

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        Q4QDU3_LEIMA | Q4QDU3: 2oef 4j18 4m28 4m2a 4m2b

(-) Related Entries Specified in the PDB File

2oef