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(-) Description

Title :  CRYSTAL STRUCTURE OF SURFACTANT PROTEIN-D D325A/R343V MUTANT
 
Authors :  B. C. Goh, M. J. Rynkiewicz, T. R. Cafarella, M. R. White, K. L. Hartshorn E. C. Crouch, O. Calin, P. H. Seeberger, K. Schulten, B. A. Seaton
Date :  02 Aug 13  (Deposition) - 04 Dec 13  (Release) - 11 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  G,H,I  (1x)
Biol. Unit 4:  J,K,L  (1x)
Keywords :  Surfactant Protein, Carbohydrate Recognition Domain, Lectin, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. C. Goh, M. J. Rynkiewicz, T. R. Cafarella, M. R. White, K. L. Hartshorn, K. Allen, E. C. Crouch, O. Calin, P. H. Seeberger, K. Schulten, B. A. Seaton
Molecular Mechanisms Of Inhibition Of Influenza By Surfactant Protein D Revealed By Large-Scale Molecular Dynamics Simulation.
Biochemistry V. 52 8527 2013
PubMed-ID: 24224757  |  Reference-DOI: 10.1021/BI4010683

(-) Compounds

Molecule 1 - PULMONARY SURFACTANT-ASSOCIATED PROTEIN D
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30A(+)
    Expression System Strain: ROSETTA BLUE
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: NECK AND CARBOHYDRATE RECOGNITION DOMAIN (UNP RESIDUES 229- 375)
    Gene: COLEC7, PSPD, SFTP4, SFTPD
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PSP-D, SP-D, COLLECTIN-7, LUNG SURFACTANT PROTEIN D

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABC         
Biological Unit 2 (1x):    DEF      
Biological Unit 3 (1x):       GHI   
Biological Unit 4 (1x):          JKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 36)

Asymmetric Unit (1, 36)
No.NameCountTypeFull Name
1CA36Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (36, 36)

Asymmetric Unit (36, 36)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:321 , ASN A:323 , GLU A:329 , ASN A:341 , ASP A:342 , HOH A:511BINDING SITE FOR RESIDUE CA A 401
02AC2SOFTWAREASP A:297 , GLU A:301 , ASP A:324 , GLU A:329 , ASP A:330 , CA A:403 , HOH A:501BINDING SITE FOR RESIDUE CA A 402
03AC3SOFTWAREGLU A:301 , ASP A:330 , CA A:402 , HOH A:502 , HOH A:503 , HOH A:504 , HOH A:581BINDING SITE FOR RESIDUE CA A 403
04AC4SOFTWAREGLU B:321 , ASN B:323 , GLU B:329 , ASN B:341 , ASP B:342 , HOH B:542BINDING SITE FOR RESIDUE CA B 401
05AC5SOFTWAREASP B:297 , GLU B:301 , ASP B:324 , GLU B:329 , ASP B:330 , HOH B:501BINDING SITE FOR RESIDUE CA B 402
06AC6SOFTWAREGLU B:301 , ASP B:330 , HOH B:502 , HOH B:503 , HOH B:504 , HOH B:505BINDING SITE FOR RESIDUE CA B 403
07AC7SOFTWAREGLU C:321 , ASN C:323 , GLU C:329 , ASN C:341 , ASP C:342BINDING SITE FOR RESIDUE CA C 401
08AC8SOFTWAREASP C:297 , GLU C:301 , ASP C:324 , GLU C:329 , ASP C:330 , CA C:403 , HOH C:501BINDING SITE FOR RESIDUE CA C 402
09AC9SOFTWAREGLU C:301 , ASP C:330 , CA C:402 , HOH C:502 , HOH C:503 , HOH C:504 , HOH C:513BINDING SITE FOR RESIDUE CA C 403
10BC1SOFTWAREGLU D:321 , ASN D:323 , GLU D:329 , ASN D:341 , ASP D:342BINDING SITE FOR RESIDUE CA D 401
11BC2SOFTWAREASP D:297 , GLU D:301 , ASP D:324 , GLU D:329 , ASP D:330 , CA D:403 , HOH D:501BINDING SITE FOR RESIDUE CA D 402
12BC3SOFTWAREGLU D:301 , ASP D:330 , CA D:402 , HOH D:502 , HOH D:503 , HOH D:504BINDING SITE FOR RESIDUE CA D 403
13BC4SOFTWAREGLU E:321 , ASN E:323 , GLU E:329 , ASN E:341 , ASP E:342 , HOH E:621BINDING SITE FOR RESIDUE CA E 401
14BC5SOFTWAREASP E:297 , GLU E:301 , ASP E:324 , GLU E:329 , ASP E:330 , CA E:403 , HOH E:501BINDING SITE FOR RESIDUE CA E 402
15BC6SOFTWAREGLU E:301 , ASP E:330 , CA E:402 , HOH E:502 , HOH E:560 , HOH E:573BINDING SITE FOR RESIDUE CA E 403
16BC7SOFTWAREGLU F:321 , ASN F:323 , GLU F:329 , ASN F:341 , ASP F:342BINDING SITE FOR RESIDUE CA F 401
17BC8SOFTWAREASP F:297 , GLU F:301 , ASP F:324 , GLU F:329 , ASP F:330 , HOH F:501BINDING SITE FOR RESIDUE CA F 402
18BC9SOFTWAREGLU F:301 , ASP F:330 , HOH F:502 , HOH F:503 , HOH F:504BINDING SITE FOR RESIDUE CA F 403
19CC1SOFTWAREGLU G:321 , ASN G:323 , GLU G:329 , ASN G:341 , ASP G:342 , HOH G:586BINDING SITE FOR RESIDUE CA G 401
20CC2SOFTWAREASP G:297 , GLU G:301 , ASP G:324 , GLU G:329 , ASP G:330 , CA G:403 , HOH G:501BINDING SITE FOR RESIDUE CA G 402
21CC3SOFTWAREGLU G:301 , ASP G:330 , CA G:402 , HOH G:502 , HOH G:503 , HOH G:504 , HOH G:528BINDING SITE FOR RESIDUE CA G 403
22CC4SOFTWAREGLU H:321 , ASN H:323 , GLU H:329 , ASN H:341 , ASP H:342 , HOH H:520BINDING SITE FOR RESIDUE CA H 401
23CC5SOFTWAREASP H:297 , GLU H:301 , ASP H:324 , GLU H:329 , ASP H:330BINDING SITE FOR RESIDUE CA H 402
24CC6SOFTWAREGLU H:301 , ASP H:330 , HOH H:501 , HOH H:502 , HOH H:538BINDING SITE FOR RESIDUE CA H 403
25CC7SOFTWAREGLU I:321 , ASN I:323 , GLU I:329 , ASN I:341 , ASP I:342 , HOH I:508BINDING SITE FOR RESIDUE CA I 401
26CC8SOFTWAREASP I:297 , GLU I:301 , ASP I:324 , GLU I:329 , ASP I:330 , HOH I:501BINDING SITE FOR RESIDUE CA I 402
27CC9SOFTWAREGLU I:301 , ASP I:330 , HOH I:586BINDING SITE FOR RESIDUE CA I 403
28DC1SOFTWAREGLU J:321 , ASN J:323 , GLU J:329 , ASN J:341 , ASP J:342BINDING SITE FOR RESIDUE CA J 401
29DC2SOFTWAREASP J:297 , GLU J:301 , ASP J:324 , GLU J:329 , ASP J:330BINDING SITE FOR RESIDUE CA J 402
30DC3SOFTWAREASP J:297 , GLU J:301 , ASP J:330 , HOH J:501 , HOH J:502BINDING SITE FOR RESIDUE CA J 403
31DC4SOFTWAREGLU K:321 , ASN K:323 , GLU K:329 , ASN K:341 , ASP K:342 , HOH K:516BINDING SITE FOR RESIDUE CA K 401
32DC5SOFTWAREASP K:297 , GLU K:301 , ASP K:324 , GLU K:329 , ASP K:330 , CA K:403 , HOH K:501BINDING SITE FOR RESIDUE CA K 402
33DC6SOFTWAREGLU K:301 , ASP K:330 , CA K:402 , HOH K:502 , HOH K:503 , HOH K:504BINDING SITE FOR RESIDUE CA K 403
34DC7SOFTWAREGLU L:321 , ASN L:323 , GLU L:329 , ASN L:341 , ASP L:342BINDING SITE FOR RESIDUE CA L 401
35DC8SOFTWAREASP L:297 , GLU L:301 , ASP L:324 , GLU L:329 , ASP L:330 , CA L:403 , HOH L:501BINDING SITE FOR RESIDUE CA L 402
36DC9SOFTWAREGLU L:301 , ASP L:330 , CA L:402 , HOH L:502 , HOH L:503 , HOH L:504BINDING SITE FOR RESIDUE CA L 403

(-) SS Bonds  (24, 24)

Asymmetric Unit
No.Residues
1A:261 -A:353
2A:331 -A:345
3B:261 -B:353
4B:331 -B:345
5C:261 -C:353
6C:331 -C:345
7D:261 -D:353
8D:331 -D:345
9E:261 -E:353
10E:331 -E:345
11F:261 -F:353
12F:331 -F:345
13G:261 -G:353
14G:331 -G:345
15H:261 -H:353
16H:331 -H:345
17I:261 -I:353
18I:331 -I:345
19J:261 -J:353
20J:331 -J:345
21K:261 -K:353
22K:331 -K:345
23L:261 -L:353
24L:331 -L:345

(-) Cis Peptide Bonds  (23, 23)

Asymmetric Unit
No.Residues
1Phe A:234 -Pro A:235
2Phe B:234 -Pro B:235
3Glu B:321 -Pro B:322
4Phe C:234 -Pro C:235
5Glu C:321 -Pro C:322
6Phe D:234 -Pro D:235
7Glu D:321 -Pro D:322
8Phe E:234 -Pro E:235
9Glu E:321 -Pro E:322
10Phe F:234 -Pro F:235
11Glu F:321 -Pro F:322
12Phe G:234 -Pro G:235
13Glu G:321 -Pro G:322
14Phe H:234 -Pro H:235
15Glu H:321 -Pro H:322
16Phe I:234 -Pro I:235
17Glu I:321 -Pro I:322
18Phe J:234 -Pro J:235
19Glu J:321 -Pro J:322
20Phe K:234 -Pro K:235
21Glu K:321 -Pro K:322
22Phe L:234 -Pro L:235
23Glu L:321 -Pro L:322

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M17)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M17)

(-) Exons   (0, 0)

(no "Exon" information available for 4M17)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains d4m17a_ A: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..eeee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhhhhhhh..eeeeee...........................hhhhh..eeee.....eeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m17 A 216 GQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVYSNWAPGEPNDAGGSEDCVEIFTNGKWNDVACGEKRLVVCEF 355
                                   225       235       245       255       265       275       285       295       305       315       325       335       345       355


Chain B from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains d4m17b_ B: automated matches                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh..eeee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhhhhhhh..eeeeee...........................hhhhh..eeee.....eeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m17 B 214 LQGQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVYSNWAPGEPNDAGGSEDCVEIFTNGKWNDVACGEKRLVVCEF 355
                                   223       233       243       253       263       273       283       293       303       313       323       333       343       353  


Chain C from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains -----------------------d4m17c1 C:235-355 automated matches                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhh..eeee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhhhhhhh..eeeeee...........................hhhhh..eeee.....eeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m17 C 212 EALQGQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVYSNWAPGEPNDAGGSEDCVEIFTNGKWNDVACGEKRLVVCEF 355
                                   221       231       241       251       261       271       281       291       301       311       321       331       341       351    


Chain D from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------d4m17d1 D:235-355 automated matches                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh..eeee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhhhhhhh..eeeeee...........................hhhhh..eeee.....eeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m17 D 216 GQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVYSNWAPGEPNDAGGSEDCVEIFTNGKWNDVACGEKRLVVCEF 355
                                   225       235       245       255       265       275       285       295       305       315       325       335       345       355


Chain E from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------d4m17e1 E:235-355 automated matches                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..eeee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhhhhhhh..eeeeee...........................hhhhh..eeee.....eeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m17 E 216 GQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVYSNWAPGEPNDAGGSEDCVEIFTNGKWNDVACGEKRLVVCEF 355
                                   225       235       245       255       265       275       285       295       305       315       325       335       345       355


Chain F from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains --------------------d4m17f1 F:235-355 automated matches                                                                                       SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh..eeee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhhhhhhh..eeeeee...........................hhhhh..eeee.....eeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m17 F 215 QGQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVYSNWAPGEPNDAGGSEDCVEIFTNGKWNDVACGEKRLVVCEF 355
                                   224       234       244       254       264       274       284       294       304       314       324       334       344       354 


Chain G from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains d4m17g_ G: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh...eeee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhhhhhhh..eeeeee...........................hhhhh..eeee.....eeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m17 G 216 GQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVYSNWAPGEPNDAGGSEDCVEIFTNGKWNDVACGEKRLVVCEF 355
                                   225       235       245       255       265       275       285       295       305       315       325       335       345       355


Chain H from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains d4m17h_ H: automated matches                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh...eeee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhhhhhhh..eeeeee...........................hhhhh..eeee.....eeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m17 H 214 LQGQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVYSNWAPGEPNDAGGSEDCVEIFTNGKWNDVACGEKRLVVCEF 355
                                   223       233       243       253       263       273       283       293       303       313       323       333       343       353  


Chain I from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains d4m17i_ I: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..eeee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhhhhhhh..eeeeee...........................hhhhh..eeee.....eeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m17 I 216 GQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVYSNWAPGEPNDAGGSEDCVEIFTNGKWNDVACGEKRLVVCEF 355
                                   225       235       245       255       265       275       285       295       305       315       325       335       345       355


Chain J from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains d4m17j_ J: automated matches                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..eeee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhhhhhhh..eeeeee...........................hhhhh..eeee.....eeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m17 J 216 GQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVYSNWAPGEPNDAGGSEDCVEIFTNGKWNDVACGEKRLVVCEF 355
                                   225       235       245       255       265       275       285       295       305       315       325       335       345       355


Chain K from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains d4m17k_ K: automated matches                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..eeee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhhhhhhh..eeeeee...........................hhhhh..eeee.....eeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m17 K 217 QVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVYSNWAPGEPNDAGGSEDCVEIFTNGKWNDVACGEKRLVVCEF 355
                                   226       236       246       256       266       276       286       296       306       316       326       336       346         


Chain L from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains d4m17l_ L: automated matches                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh..eeee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhhhhhhh..eeeeee...........................hhhhh..eeee.....eeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m17 L 218 VQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVYSNWAPGEPNDAGGSEDCVEIFTNGKWNDVACGEKRLVVCEF 355
                                   227       237       247       257       267       277       287       297       307       317       327       337       347
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M17)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M17)

(-) Gene Ontology  (27, 27)

Asymmetric Unit(hide GO term definitions)

 Visualization

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Asymmetric Unit
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  4m17
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  SFTPD_HUMAN | P35247
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SFTPD_HUMAN | P35247: 1b08 1m7l 1pw9 1pwb 2ggu 2ggx 2orj 2ork 2os9 2ria 2rib 2ric 2rid 2rie 3dbz 3g81 3g83 3g84 3ikn 3ikp 3ikq 3ikr 4e52 4m18

(-) Related Entries Specified in the PDB File

4m18 SURFACTANT PROTEIN-D D325A/R343V MUTANT IN COMPLEX WITH TRIMANNOSE