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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF SURFACTANT PROTEIN-D D325A/R343V MUTANT
Keywords SURFACTANT PROTEIN, CARBOHYDRATE RECOGNITION DOMAIN, LECTIN, BINDING PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4M17     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  A 140 1061 0
2  Protein   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  B 142 1078 0
3  Protein   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  C 144 1092 0
4  Protein   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  D 140 1061 0
5  Protein   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  E 140 1061 0
6  Protein   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  F 141 1070 0
7  Protein   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  G 140 1061 0
8  Protein   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  H 142 1078 0
9  Protein   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  I 140 1061 0
10  Protein   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  J 140 1061 0
11  Protein   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  K 139 1057 0
12  Protein   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  L 138 1048 0
13  Ligand   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  A 3 0 3
14  Ligand   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  B 3 0 3
15  Ligand   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  C 3 0 3
16  Ligand   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  D 3 0 3
17  Ligand   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  E 3 0 3
18  Ligand   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  F 3 0 3
19  Ligand   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  G 3 0 3
20  Ligand   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  H 3 0 3
21  Ligand   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  I 3 0 3
22  Ligand   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  J 3 0 3
23  Ligand   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  K 3 0 3
24  Ligand   PULMONARY SURFACTANT-ASSOCIATED PROTEIN D  L 3 0 3
25 Water     1232 0 1232
total       2954 12789 1268
Proteins
Unit 1 GLY216 GLN217 VAL218 GLN219 HIS220 LEU221 GLN222 ALA223 ALA224 PHE225 SER226 GLN227 TYR228 LYS229 LYS230 VAL231 GLU232 LEU233 PHE234 PRO235 ASN236 GLY237 GLN238 SER239 VAL240 GLY241 GLU242 LYS243 ILE244 PHE245 LYS246 THR247 ALA248 GLY249 PHE250 VAL251 LYS252 PRO253 PHE254 THR255 GLU256 ALA257 GLN258 LEU259 LEU260 CYS261 THR262 GLN263 ALA264 GLY265 GLY266 GLN267 LEU268 ALA269 SER270 PRO271 ARG272 SER273 ALA274 ALA275 GLU276 ASN277 ALA278 ALA279 LEU280 GLN281 GLN282 LEU283 VAL284 VAL285 ALA286 LYS287 ASN288 GLU289 ALA290 ALA291 PHE292 LEU293 SER294 MET295 THR296 ASP297 SER298 LYS299 THR300 GLU301 GLY302 LYS303 PHE304 THR305 TYR306 PRO307 THR308 GLY309 GLU310 SER311 LEU312 VAL313 TYR314 SER315 ASN316 TRP317 ALA318 PRO319 GLY320 GLU321 PRO322 ASN323 ASP324 ALA325 GLY326 GLY327 SER328 GLU329 ASP330 CYS331 VAL332 GLU333 ILE334 PHE335 THR336 ASN337 GLY338 LYS339 TRP340 ASN341 ASP342 VAL343 ALA344 CYS345 GLY346 GLU347 LYS348 ARG349 LEU350 VAL351 VAL352 CYS353 GLU354 PHE355
Unit 2 LEU214 GLN215 GLY216 GLN217 VAL218 GLN219 HIS220 LEU221 GLN222 ALA223 ALA224 PHE225 SER226 GLN227 TYR228 LYS229 LYS230 VAL231 GLU232 LEU233 PHE234 PRO235 ASN236 GLY237 GLN238 SER239 VAL240 GLY241 GLU242 LYS243 ILE244 PHE245 LYS246 THR247 ALA248 GLY249 PHE250 VAL251 LYS252 PRO253 PHE254 THR255 GLU256 ALA257 GLN258 LEU259 LEU260 CYS261 THR262 GLN263 ALA264 GLY265 GLY266 GLN267 LEU268 ALA269 SER270 PRO271 ARG272 SER273 ALA274 ALA275 GLU276 ASN277 ALA278 ALA279 LEU280 GLN281 GLN282 LEU283 VAL284 VAL285 ALA286 LYS287 ASN288 GLU289 ALA290 ALA291 PHE292 LEU293 SER294 MET295 THR296 ASP297 SER298 LYS299 THR300 GLU301 GLY302 LYS303 PHE304 THR305 TYR306 PRO307 THR308 GLY309 GLU310 SER311 LEU312 VAL313 TYR314 SER315 ASN316 TRP317 ALA318 PRO319 GLY320 GLU321 PRO322 ASN323 ASP324 ALA325 GLY326 GLY327 SER328 GLU329 ASP330 CYS331 VAL332 GLU333 ILE334 PHE335 THR336 ASN337 GLY338 LYS339 TRP340 ASN341 ASP342 VAL343 ALA344 CYS345 GLY346 GLU347 LYS348 ARG349 LEU350 VAL351 VAL352 CYS353 GLU354 PHE355
Unit 3 GLU212 ALA213 LEU214 GLN215 GLY216 GLN217 VAL218 GLN219 HIS220 LEU221 GLN222 ALA223 ALA224 PHE225 SER226 GLN227 TYR228 LYS229 LYS230 VAL231 GLU232 LEU233 PHE234 PRO235 ASN236 GLY237 GLN238 SER239 VAL240 GLY241 GLU242 LYS243 ILE244 PHE245 LYS246 THR247 ALA248 GLY249 PHE250 VAL251 LYS252 PRO253 PHE254 THR255 GLU256 ALA257 GLN258 LEU259 LEU260 CYS261 THR262 GLN263 ALA264 GLY265 GLY266 GLN267 LEU268 ALA269 SER270 PRO271 ARG272 SER273 ALA274 ALA275 GLU276 ASN277 ALA278 ALA279 LEU280 GLN281 GLN282 LEU283 VAL284 VAL285 ALA286 LYS287 ASN288 GLU289 ALA290 ALA291 PHE292 LEU293 SER294 MET295 THR296 ASP297 SER298 LYS299 THR300 GLU301 GLY302 LYS303 PHE304 THR305 TYR306 PRO307 THR308 GLY309 GLU310 SER311 LEU312 VAL313 TYR314 SER315 ASN316 TRP317 ALA318 PRO319 GLY320 GLU321 PRO322 ASN323 ASP324 ALA325 GLY326 GLY327 SER328 GLU329 ASP330 CYS331 VAL332 GLU333 ILE334 PHE335 THR336 ASN337 GLY338 LYS339 TRP340 ASN341 ASP342 VAL343 ALA344 CYS345 GLY346 GLU347 LYS348 ARG349 LEU350 VAL351 VAL352 CYS353 GLU354 PHE355
Unit 4 GLY216 GLN217 VAL218 GLN219 HIS220 LEU221 GLN222 ALA223 ALA224 PHE225 SER226 GLN227 TYR228 LYS229 LYS230 VAL231 GLU232 LEU233 PHE234 PRO235 ASN236 GLY237 GLN238 SER239 VAL240 GLY241 GLU242 LYS243 ILE244 PHE245 LYS246 THR247 ALA248 GLY249 PHE250 VAL251 LYS252 PRO253 PHE254 THR255 GLU256 ALA257 GLN258 LEU259 LEU260 CYS261 THR262 GLN263 ALA264 GLY265 GLY266 GLN267 LEU268 ALA269 SER270 PRO271 ARG272 SER273 ALA274 ALA275 GLU276 ASN277 ALA278 ALA279 LEU280 GLN281 GLN282 LEU283 VAL284 VAL285 ALA286 LYS287 ASN288 GLU289 ALA290 ALA291 PHE292 LEU293 SER294 MET295 THR296 ASP297 SER298 LYS299 THR300 GLU301 GLY302 LYS303 PHE304 THR305 TYR306 PRO307 THR308 GLY309 GLU310 SER311 LEU312 VAL313 TYR314 SER315 ASN316 TRP317 ALA318 PRO319 GLY320 GLU321 PRO322 ASN323 ASP324 ALA325 GLY326 GLY327 SER328 GLU329 ASP330 CYS331 VAL332 GLU333 ILE334 PHE335 THR336 ASN337 GLY338 LYS339 TRP340 ASN341 ASP342 VAL343 ALA344 CYS345 GLY346 GLU347 LYS348 ARG349 LEU350 VAL351 VAL352 CYS353 GLU354 PHE355
Unit 5 GLY216 GLN217 VAL218 GLN219 HIS220 LEU221 GLN222 ALA223 ALA224 PHE225 SER226 GLN227 TYR228 LYS229 LYS230 VAL231 GLU232 LEU233 PHE234 PRO235 ASN236 GLY237 GLN238 SER239 VAL240 GLY241 GLU242 LYS243 ILE244 PHE245 LYS246 THR247 ALA248 GLY249 PHE250 VAL251 LYS252 PRO253 PHE254 THR255 GLU256 ALA257 GLN258 LEU259 LEU260 CYS261 THR262 GLN263 ALA264 GLY265 GLY266 GLN267 LEU268 ALA269 SER270 PRO271 ARG272 SER273 ALA274 ALA275 GLU276 ASN277 ALA278 ALA279 LEU280 GLN281 GLN282 LEU283 VAL284 VAL285 ALA286 LYS287 ASN288 GLU289 ALA290 ALA291 PHE292 LEU293 SER294 MET295 THR296 ASP297 SER298 LYS299 THR300 GLU301 GLY302 LYS303 PHE304 THR305 TYR306 PRO307 THR308 GLY309 GLU310 SER311 LEU312 VAL313 TYR314 SER315 ASN316 TRP317 ALA318 PRO319 GLY320 GLU321 PRO322 ASN323 ASP324 ALA325 GLY326 GLY327 SER328 GLU329 ASP330 CYS331 VAL332 GLU333 ILE334 PHE335 THR336 ASN337 GLY338 LYS339 TRP340 ASN341 ASP342 VAL343 ALA344 CYS345 GLY346 GLU347 LYS348 ARG349 LEU350 VAL351 VAL352 CYS353 GLU354 PHE355
Unit 6 GLN215 GLY216 GLN217 VAL218 GLN219 HIS220 LEU221 GLN222 ALA223 ALA224 PHE225 SER226 GLN227 TYR228 LYS229 LYS230 VAL231 GLU232 LEU233 PHE234 PRO235 ASN236 GLY237 GLN238 SER239 VAL240 GLY241 GLU242 LYS243 ILE244 PHE245 LYS246 THR247 ALA248 GLY249 PHE250 VAL251 LYS252 PRO253 PHE254 THR255 GLU256 ALA257 GLN258 LEU259 LEU260 CYS261 THR262 GLN263 ALA264 GLY265 GLY266 GLN267 LEU268 ALA269 SER270 PRO271 ARG272 SER273 ALA274 ALA275 GLU276 ASN277 ALA278 ALA279 LEU280 GLN281 GLN282 LEU283 VAL284 VAL285 ALA286 LYS287 ASN288 GLU289 ALA290 ALA291 PHE292 LEU293 SER294 MET295 THR296 ASP297 SER298 LYS299 THR300 GLU301 GLY302 LYS303 PHE304 THR305 TYR306 PRO307 THR308 GLY309 GLU310 SER311 LEU312 VAL313 TYR314 SER315 ASN316 TRP317 ALA318 PRO319 GLY320 GLU321 PRO322 ASN323 ASP324 ALA325 GLY326 GLY327 SER328 GLU329 ASP330 CYS331 VAL332 GLU333 ILE334 PHE335 THR336 ASN337 GLY338 LYS339 TRP340 ASN341 ASP342 VAL343 ALA344 CYS345 GLY346 GLU347 LYS348 ARG349 LEU350 VAL351 VAL352 CYS353 GLU354 PHE355
Unit 7 GLY216 GLN217 VAL218 GLN219 HIS220 LEU221 GLN222 ALA223 ALA224 PHE225 SER226 GLN227 TYR228 LYS229 LYS230 VAL231 GLU232 LEU233 PHE234 PRO235 ASN236 GLY237 GLN238 SER239 VAL240 GLY241 GLU242 LYS243 ILE244 PHE245 LYS246 THR247 ALA248 GLY249 PHE250 VAL251 LYS252 PRO253 PHE254 THR255 GLU256 ALA257 GLN258 LEU259 LEU260 CYS261 THR262 GLN263 ALA264 GLY265 GLY266 GLN267 LEU268 ALA269 SER270 PRO271 ARG272 SER273 ALA274 ALA275 GLU276 ASN277 ALA278 ALA279 LEU280 GLN281 GLN282 LEU283 VAL284 VAL285 ALA286 LYS287 ASN288 GLU289 ALA290 ALA291 PHE292 LEU293 SER294 MET295 THR296 ASP297 SER298 LYS299 THR300 GLU301 GLY302 LYS303 PHE304 THR305 TYR306 PRO307 THR308 GLY309 GLU310 SER311 LEU312 VAL313 TYR314 SER315 ASN316 TRP317 ALA318 PRO319 GLY320 GLU321 PRO322 ASN323 ASP324 ALA325 GLY326 GLY327 SER328 GLU329 ASP330 CYS331 VAL332 GLU333 ILE334 PHE335 THR336 ASN337 GLY338 LYS339 TRP340 ASN341 ASP342 VAL343 ALA344 CYS345 GLY346 GLU347 LYS348 ARG349 LEU350 VAL351 VAL352 CYS353 GLU354 PHE355
Unit 8 LEU214 GLN215 GLY216 GLN217 VAL218 GLN219 HIS220 LEU221 GLN222 ALA223 ALA224 PHE225 SER226 GLN227 TYR228 LYS229 LYS230 VAL231 GLU232 LEU233 PHE234 PRO235 ASN236 GLY237 GLN238 SER239 VAL240 GLY241 GLU242 LYS243 ILE244 PHE245 LYS246 THR247 ALA248 GLY249 PHE250 VAL251 LYS252 PRO253 PHE254 THR255 GLU256 ALA257 GLN258 LEU259 LEU260 CYS261 THR262 GLN263 ALA264 GLY265 GLY266 GLN267 LEU268 ALA269 SER270 PRO271 ARG272 SER273 ALA274 ALA275 GLU276 ASN277 ALA278 ALA279 LEU280 GLN281 GLN282 LEU283 VAL284 VAL285 ALA286 LYS287 ASN288 GLU289 ALA290 ALA291 PHE292 LEU293 SER294 MET295 THR296 ASP297 SER298 LYS299 THR300 GLU301 GLY302 LYS303 PHE304 THR305 TYR306 PRO307 THR308 GLY309 GLU310 SER311 LEU312 VAL313 TYR314 SER315 ASN316 TRP317 ALA318 PRO319 GLY320 GLU321 PRO322 ASN323 ASP324 ALA325 GLY326 GLY327 SER328 GLU329 ASP330 CYS331 VAL332 GLU333 ILE334 PHE335 THR336 ASN337 GLY338 LYS339 TRP340 ASN341 ASP342 VAL343 ALA344 CYS345 GLY346 GLU347 LYS348 ARG349 LEU350 VAL351 VAL352 CYS353 GLU354 PHE355
Unit 9 GLY216 GLN217 VAL218 GLN219 HIS220 LEU221 GLN222 ALA223 ALA224 PHE225 SER226 GLN227 TYR228 LYS229 LYS230 VAL231 GLU232 LEU233 PHE234 PRO235 ASN236 GLY237 GLN238 SER239 VAL240 GLY241 GLU242 LYS243 ILE244 PHE245 LYS246 THR247 ALA248 GLY249 PHE250 VAL251 LYS252 PRO253 PHE254 THR255 GLU256 ALA257 GLN258 LEU259 LEU260 CYS261 THR262 GLN263 ALA264 GLY265 GLY266 GLN267 LEU268 ALA269 SER270 PRO271 ARG272 SER273 ALA274 ALA275 GLU276 ASN277 ALA278 ALA279 LEU280 GLN281 GLN282 LEU283 VAL284 VAL285 ALA286 LYS287 ASN288 GLU289 ALA290 ALA291 PHE292 LEU293 SER294 MET295 THR296 ASP297 SER298 LYS299 THR300 GLU301 GLY302 LYS303 PHE304 THR305 TYR306 PRO307 THR308 GLY309 GLU310 SER311 LEU312 VAL313 TYR314 SER315 ASN316 TRP317 ALA318 PRO319 GLY320 GLU321 PRO322 ASN323 ASP324 ALA325 GLY326 GLY327 SER328 GLU329 ASP330 CYS331 VAL332 GLU333 ILE334 PHE335 THR336 ASN337 GLY338 LYS339 TRP340 ASN341 ASP342 VAL343 ALA344 CYS345 GLY346 GLU347 LYS348 ARG349 LEU350 VAL351 VAL352 CYS353 GLU354 PHE355
Unit 10 GLY216 GLN217 VAL218 GLN219 HIS220 LEU221 GLN222 ALA223 ALA224 PHE225 SER226 GLN227 TYR228 LYS229 LYS230 VAL231 GLU232 LEU233 PHE234 PRO235 ASN236 GLY237 GLN238 SER239 VAL240 GLY241 GLU242 LYS243 ILE244 PHE245 LYS246 THR247 ALA248 GLY249 PHE250 VAL251 LYS252 PRO253 PHE254 THR255 GLU256 ALA257 GLN258 LEU259 LEU260 CYS261 THR262 GLN263 ALA264 GLY265 GLY266 GLN267 LEU268 ALA269 SER270 PRO271 ARG272 SER273 ALA274 ALA275 GLU276 ASN277 ALA278 ALA279 LEU280 GLN281 GLN282 LEU283 VAL284 VAL285 ALA286 LYS287 ASN288 GLU289 ALA290 ALA291 PHE292 LEU293 SER294 MET295 THR296 ASP297 SER298 LYS299 THR300 GLU301 GLY302 LYS303 PHE304 THR305 TYR306 PRO307 THR308 GLY309 GLU310 SER311 LEU312 VAL313 TYR314 SER315 ASN316 TRP317 ALA318 PRO319 GLY320 GLU321 PRO322 ASN323 ASP324 ALA325 GLY326 GLY327 SER328 GLU329 ASP330 CYS331 VAL332 GLU333 ILE334 PHE335 THR336 ASN337 GLY338 LYS339 TRP340 ASN341 ASP342 VAL343 ALA344 CYS345 GLY346 GLU347 LYS348 ARG349 LEU350 VAL351 VAL352 CYS353 GLU354 PHE355
Unit 11 GLN217 VAL218 GLN219 HIS220 LEU221 GLN222 ALA223 ALA224 PHE225 SER226 GLN227 TYR228 LYS229 LYS230 VAL231 GLU232 LEU233 PHE234 PRO235 ASN236 GLY237 GLN238 SER239 VAL240 GLY241 GLU242 LYS243 ILE244 PHE245 LYS246 THR247 ALA248 GLY249 PHE250 VAL251 LYS252 PRO253 PHE254 THR255 GLU256 ALA257 GLN258 LEU259 LEU260 CYS261 THR262 GLN263 ALA264 GLY265 GLY266 GLN267 LEU268 ALA269 SER270 PRO271 ARG272 SER273 ALA274 ALA275 GLU276 ASN277 ALA278 ALA279 LEU280 GLN281 GLN282 LEU283 VAL284 VAL285 ALA286 LYS287 ASN288 GLU289 ALA290 ALA291 PHE292 LEU293 SER294 MET295 THR296 ASP297 SER298 LYS299 THR300 GLU301 GLY302 LYS303 PHE304 THR305 TYR306 PRO307 THR308 GLY309 GLU310 SER311 LEU312 VAL313 TYR314 SER315 ASN316 TRP317 ALA318 PRO319 GLY320 GLU321 PRO322 ASN323 ASP324 ALA325 GLY326 GLY327 SER328 GLU329 ASP330 CYS331 VAL332 GLU333 ILE334 PHE335 THR336 ASN337 GLY338 LYS339 TRP340 ASN341 ASP342 VAL343 ALA344 CYS345 GLY346 GLU347 LYS348 ARG349 LEU350 VAL351 VAL352 CYS353 GLU354 PHE355
Unit 12 VAL218 GLN219 HIS220 LEU221 GLN222 ALA223 ALA224 PHE225 SER226 GLN227 TYR228 LYS229 LYS230 VAL231 GLU232 LEU233 PHE234 PRO235 ASN236 GLY237 GLN238 SER239 VAL240 GLY241 GLU242 LYS243 ILE244 PHE245 LYS246 THR247 ALA248 GLY249 PHE250 VAL251 LYS252 PRO253 PHE254 THR255 GLU256 ALA257 GLN258 LEU259 LEU260 CYS261 THR262 GLN263 ALA264 GLY265 GLY266 GLN267 LEU268 ALA269 SER270 PRO271 ARG272 SER273 ALA274 ALA275 GLU276 ASN277 ALA278 ALA279 LEU280 GLN281 GLN282 LEU283 VAL284 VAL285 ALA286 LYS287 ASN288 GLU289 ALA290 ALA291 PHE292 LEU293 SER294 MET295 THR296 ASP297 SER298 LYS299 THR300 GLU301 GLY302 LYS303 PHE304 THR305 TYR306 PRO307 THR308 GLY309 GLU310 SER311 LEU312 VAL313 TYR314 SER315 ASN316 TRP317 ALA318 PRO319 GLY320 GLU321 PRO322 ASN323 ASP324 ALA325 GLY326 GLY327 SER328 GLU329 ASP330 CYS331 VAL332 GLU333 ILE334 PHE335 THR336 ASN337 GLY338 LYS339 TRP340 ASN341 ASP342 VAL343 ALA344 CYS345 GLY346 GLU347 LYS348 ARG349 LEU350 VAL351 VAL352 CYS353 GLU354 PHE355
Ligands
Unit 13 CA401 CA402 CA403
Unit 14 CA401 CA402 CA403
Unit 15 CA401 CA402 CA403
Unit 16 CA401 CA402 CA403
Unit 17 CA401 CA402 CA403
Unit 18 CA401 CA402 CA403
Unit 19 CA401 CA402 CA403
Unit 20 CA401 CA402 CA403
Unit 21 CA401 CA402 CA403
Unit 22 CA401 CA402 CA403
Unit 23 CA401 CA402 CA403
Unit 24 CA401 CA402 CA403
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany