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4JLG
Asym. Unit
Info
Asym.Unit (94 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (46 KB)
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(1)
Title
:
SETD7 IN COMPLEX WITH INHIBITOR (R)-PFI-2 AND S-ADENOSYL-METHIONINE
Authors
:
A. Dong, H. Wu, H. Zeng, M. El Bakkouri, D. Barsyte, M. Vedadi, J. Tatloc M. Bunnage, C. Bountra, C. H. Arrowsmith, A. M. Edwards, P. J. Brown, St Genomics Consortium (Sgc)
Date
:
12 Mar 13 (Deposition) - 17 Apr 13 (Release) - 18 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Methyltransferase, Set Domain, Histone Modification, Transcription Regulation, Histone Lysine Methyltransferase, Inhibitor, S-Adenosyl- L-Methionine, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
D. Barsyte-Lovejoy, F. Li, M. J. Oudhoff, J. H. Tatlock, A. Dong, H. Zeng, H. Wu, S. A. Freeman, M. Schapira, G. A. Senisterra, E. Kuznetsova, R. Marcellus, A. Allali-Hassani, S. Kennedy, J. P. Lambert, A. L. Couzens, A. Aman, A. C. Gingras, R. Al-Awar, P. V. Fish, B. S. Gerstenberger, L. Roberts, C. L. Benn, R. L. Grimley, M. J. Braam, F. M. Rossi, M. Sudol, P. J. Brown, M. E. Bunnage, D. R. Owen, C. Zaph, M. Vedadi, C. H. Arrowsmith
(R)-Pfi-2 Is A Potent And Selective Inhibitor Of Setd7 Methyltransferase Activity In Cells.
Proc. Natl. Acad. Sci. Usa V. 111 12853 2014
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Hetero Components
(3, 29)
Info
All Hetero Components
1a: 8-FLUORO-N-{(2R)-1-OXO-1-(PYRROLID... (1L8a)
1b: 8-FLUORO-N-{(2R)-1-OXO-1-(PYRROLID... (1L8b)
2a: S-ADENOSYLMETHIONINE (SAMa)
2b: S-ADENOSYLMETHIONINE (SAMb)
3a: UNKNOWN ATOM OR ION (UNXa)
3b: UNKNOWN ATOM OR ION (UNXb)
3c: UNKNOWN ATOM OR ION (UNXc)
3d: UNKNOWN ATOM OR ION (UNXd)
3e: UNKNOWN ATOM OR ION (UNXe)
3f: UNKNOWN ATOM OR ION (UNXf)
3g: UNKNOWN ATOM OR ION (UNXg)
3h: UNKNOWN ATOM OR ION (UNXh)
3i: UNKNOWN ATOM OR ION (UNXi)
3j: UNKNOWN ATOM OR ION (UNXj)
3k: UNKNOWN ATOM OR ION (UNXk)
3l: UNKNOWN ATOM OR ION (UNXl)
3m: UNKNOWN ATOM OR ION (UNXm)
3n: UNKNOWN ATOM OR ION (UNXn)
3o: UNKNOWN ATOM OR ION (UNXo)
3p: UNKNOWN ATOM OR ION (UNXp)
3q: UNKNOWN ATOM OR ION (UNXq)
3r: UNKNOWN ATOM OR ION (UNXr)
3s: UNKNOWN ATOM OR ION (UNXs)
3t: UNKNOWN ATOM OR ION (UNXt)
3u: UNKNOWN ATOM OR ION (UNXu)
3v: UNKNOWN ATOM OR ION (UNXv)
3w: UNKNOWN ATOM OR ION (UNXw)
3x: UNKNOWN ATOM OR ION (UNXx)
3y: UNKNOWN ATOM OR ION (UNXy)
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No.
Name
Count
Type
Full Name
1
1L8
2
Ligand/Ion
8-FLUORO-N-{(2R)-1-OXO-1-(PYRROLIDIN-1-YL)-3-[3-(TRIFLUOROMETHYL)PHENYL]PROPAN-2-YL}-1,2,3,4-TETRAHYDROISOQUINOLINE-6-SULFONAMIDE
2
SAM
2
Ligand/Ion
S-ADENOSYLMETHIONINE
3
UNX
25
Ligand/Ion
UNKNOWN ATOM OR ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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Name
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Description
1
AC1
SOFTWARE
SER A:225 , ALA A:226 , GLU A:228 , GLY A:264 , ASN A:265 , HIS A:293 , LYS A:294 , ALA A:295 , ASN A:296 , HIS A:297 , TYR A:335 , TRP A:352 , GLU A:356 , 1L8 A:402 , HOH A:513 , HOH A:535 , HOH A:563 , HOH A:567 , HOH A:574 , HOH A:583 , HOH A:695
BINDING SITE FOR RESIDUE SAM A 401
2
AC2
SOFTWARE
TYR A:245 , HIS A:252 , VAL A:255 , ASP A:256 , THR A:266 , LEU A:267 , SER A:268 , TYR A:305 , TYR A:335 , GLY A:336 , TYR A:337 , HIS A:339 , SER A:340 , SAM A:401 , HOH A:658
BINDING SITE FOR RESIDUE 1L8 A 402
3
AC3
SOFTWARE
SER B:225 , ALA B:226 , GLU B:228 , GLY B:264 , ASN B:265 , HIS B:293 , LYS B:294 , ALA B:295 , ASN B:296 , HIS B:297 , TYR B:335 , TRP B:352 , GLU B:356 , 1L8 B:402 , HOH B:519 , HOH B:535 , HOH B:559 , HOH B:563 , HOH B:584 , HOH B:607 , HOH B:619
BINDING SITE FOR RESIDUE SAM B 401
4
AC4
SOFTWARE
TYR B:245 , HIS B:252 , VAL B:255 , ASP B:256 , TRP B:260 , GLY B:264 , THR B:266 , LEU B:267 , SER B:268 , VAL B:274 , TYR B:305 , TYR B:335 , GLY B:336 , TYR B:337 , HIS B:339 , SER B:340 , SAM B:401 , HOH B:542
BINDING SITE FOR RESIDUE 1L8 B 402
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4jlga2 (A:194-363)
1b: SCOP_d4jlgb2 (B:194-363)
2a: SCOP_d4jlga1 (A:117-193)
2b: SCOP_d4jlgb1 (B:118-193)
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Class
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All beta proteins
(24004)
Fold
:
beta-clip
(280)
Superfamily
:
SET domain
(44)
Family
:
Histone lysine methyltransferases
(21)
Protein domain
:
Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
(17)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d4jlga2
A:194-363
1b
d4jlgb2
B:194-363
Fold
:
open-sided beta-meander
(34)
Superfamily
:
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
(17)
Family
:
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
(17)
Protein domain
:
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
(17)
Human (Homo sapiens) [TaxId: 9606]
(17)
2a
d4jlga1
A:117-193
2b
d4jlgb1
B:118-193
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CATH Domains
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Asymmetric Unit 1
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Asym.Unit (94 KB)
Header - Asym.Unit
Biol.Unit 1 (46 KB)
Header - Biol.Unit 1
Biol.Unit 2 (46 KB)
Header - Biol.Unit 2
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