4I60 - JenaLib

Title :   CRYSTAL STRUCTURE OF AVIDIN - BIOTINYLRUTHENOCENE COMPLEX

Authors :   P. Strzelczyk, A. Bujacz, G. Bujacz

Date :   29 Nov 12 (Deposition) - 14 Aug 13 (Release) - 14 Aug 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   Beta Barrel, Biotin-Binding Protein, Biotinylruthenocene, Glycoprotein, Hen Egg White (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Strzelczyk, A. Bujacz, D. Plazuk, J. Zakrzewski, G. Bujacz
Structural Investigation Of The Interactions Of Biotinylruthenocene With Avidin.
Chem. Biol. Interact V. 204 6 2013
PubMed-ID: 23603015 | Reference-DOI: 10.1016/J.CBI.2013.04.005

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 3)

Asymmetric Unit (2, 3)

No.	Name	Count	Type	Full Name
1	B1R	1	Ligand/Ion	[(1,2,3,4,5-ETA)-CYCLOPENTADIENYL][(1,2,3,4,5-ETA)-{5-[(3AS,4S,6AR)-2-OXOHEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL]PENTANOYL}CYCLOPENTADIENYL]RUTHENIUM
2	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (2, 12)

No.	Name	Count	Type	Full Name
1	B1R	4	Ligand/Ion	[(1,2,3,4,5-ETA)-CYCLOPENTADIENYL][(1,2,3,4,5-ETA)-{5-[(3AS,4S,6AR)-2-OXOHEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL]PENTANOYL}CYCLOPENTADIENYL]RUTHENIUM
2	NAG	8	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:9 , GLY A:15 , ASN A:17 , LEU A:123 , NAG A:202 , HOH A:328 , HOH A:347	BINDING SITE FOR RESIDUE NAG A 201
2	AC2	SOFTWARE	NAG A:201	BINDING SITE FOR RESIDUE NAG A 202
3	AC3	SOFTWARE	ASN A:12 , LEU A:14 , SER A:16 , TYR A:33 , THR A:35 , VAL A:37 , THR A:38 , ALA A:39 , THR A:40 , TRP A:70 , SER A:73 , SER A:75 , THR A:77 , TRP A:97 , LEU A:99 , SER A:101 , TRP A:110 , ARG A:114 , ASN A:118 , GLU A:128	BINDING SITE FOR RESIDUE B1R A 203

SS Bonds (1, 1)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains d4i60a_ A: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee....eeee.......eeeeeee............eeeeeee.........eeeeeee......eeeeeeeeee.....eeeeeeeeee....hhhhhhh.eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i60 A   1 ARKCSLTGKWTNDLGSNMTIGAVNSKGEFTGTYTTAVTATSNEIKESPLHGTQNTINKRTQPTFGFTVNWKFSESTTVFTGQCFIDRNGKEVLKTMWLLRSSVNDIGDDWKATRVGINIFTRLRTQKE 128
                                    10        20        30        40        50        60        70        80        90       100       110       120

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

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