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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUCOSE 1-PHOSPHATE THYMIDYLYLTRANSFERASE FROM ANEURINIBACILLUS THERMOAEROPHILUS COMPLEXED WITH UDP-GALACTOSE AND UTP
 
Authors :  T. J. Chen, W. T. Chien, C. C. Lin, W. C. Wang
Date :  22 Oct 12  (Deposition) - 23 Oct 13  (Release) - 23 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (2x)
Keywords :  Thymidylyltransferase, Nucleotide Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. J. Chen, W. T. Chien, C. C. Lin, W. C. Wang
Crystal Structure Of Glucose 1-Phosphate Thymidylyltransferase From Aneurinibacillus Thermoaerophilu Complexed With Udp-Galactose And Utp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE
    Chains: A, B
    EC Number: 2.7.7.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTXB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RMLA
    Organism Scientific: ANEURINIBACILLUS THERMOAEROPHILUS
    Organism Taxid: 143495

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric Unit (3, 13)
No.NameCountTypeFull Name
1GDU2Ligand/IonGALACTOSE-URIDINE-5'-DIPHOSPHATE
2SO49Ligand/IonSULFATE ION
3UTP2Ligand/IonURIDINE 5'-TRIPHOSPHATE
Biological Unit 1 (3, 7)
No.NameCountTypeFull Name
1GDU1Ligand/IonGALACTOSE-URIDINE-5'-DIPHOSPHATE
2SO45Ligand/IonSULFATE ION
3UTP1Ligand/IonURIDINE 5'-TRIPHOSPHATE
Biological Unit 2 (3, 6)
No.NameCountTypeFull Name
1GDU1Ligand/IonGALACTOSE-URIDINE-5'-DIPHOSPHATE
2SO44Ligand/IonSULFATE ION
3UTP1Ligand/IonURIDINE 5'-TRIPHOSPHATE
Biological Unit 3 (3, 26)
No.NameCountTypeFull Name
1GDU4Ligand/IonGALACTOSE-URIDINE-5'-DIPHOSPHATE
2SO418Ligand/IonSULFATE ION
3UTP4Ligand/IonURIDINE 5'-TRIPHOSPHATE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:6 , GLY A:8 , GLY A:9 , GLN A:80 , PRO A:83 , ASP A:84 , GLY A:85 , LEU A:106 , ASP A:108 , ASN A:109 , GLY A:144 , GLU A:159 , LYS A:160 , VAL A:170 , THR A:171 , TYR A:174 , ARG A:192 , TRP A:221 , HOH A:405 , HOH A:412 , HOH A:445 , HOH A:446 , HOH A:500 , HOH A:578 , HOH A:607 , HOH A:611 , HOH A:644BINDING SITE FOR RESIDUE GDU A 300
02AC2SOFTWARELEU A:43 , TYR A:112 , GLY A:113 , HIS A:114 , GLY A:115 , PHE A:116 , THR A:117 , GLU A:118 , VAL A:248 , ALA A:249 , ILE A:254 , ARG A:257 , HOH A:402 , HOH A:424 , HOH A:586 , GLY B:216 , ARG B:217 , GLY B:218 , HOH B:529BINDING SITE FOR RESIDUE UTP A 301
03AC3SOFTWAREGLY A:11 , THR A:12 , ARG A:13 , HOH A:500 , HOH A:508 , HOH A:607 , HOH A:647BINDING SITE FOR RESIDUE SO4 A 302
04AC4SOFTWAREGLY A:66 , GLY A:67 , GLY A:68 , SER A:69 , GLU A:70 , HOH A:619BINDING SITE FOR RESIDUE SO4 A 303
05AC5SOFTWAREASN A:125 , ARG A:126 , LYS A:127 , SER A:128 , HOH A:510 , LYS B:268 , HOH B:586BINDING SITE FOR RESIDUE SO4 A 304
06AC6SOFTWARELYS A:153 , HIS A:211 , HOH A:414BINDING SITE FOR RESIDUE SO4 A 305
07AC7SOFTWARESER A:190 , ALA A:191 , HOH A:474 , HOH A:549BINDING SITE FOR RESIDUE SO4 A 306
08AC8SOFTWARELEU B:6 , GLY B:8 , GLY B:9 , GLN B:80 , PRO B:83 , ASP B:84 , GLY B:85 , LEU B:86 , LEU B:106 , ASP B:108 , GLY B:144 , GLU B:159 , LYS B:160 , VAL B:170 , THR B:171 , TYR B:174 , ARG B:192 , ILE B:197 , THR B:198 , SO4 B:302 , HOH B:401 , HOH B:406 , HOH B:424 , HOH B:441 , HOH B:460 , HOH B:579 , HOH B:602 , HOH B:614 , HOH B:639BINDING SITE FOR RESIDUE GDU B 300
09AC9SOFTWAREGLY A:216 , ARG A:217 , GLY A:218 , LEU B:43 , TYR B:112 , GLY B:113 , HIS B:114 , GLY B:115 , PHE B:116 , THR B:117 , VAL B:248 , ALA B:249 , GLU B:253 , ILE B:254 , HOH B:408 , HOH B:416 , HOH B:445 , HOH B:511 , HOH B:555BINDING SITE FOR RESIDUE UTP B 301
10BC1SOFTWAREGLY B:9 , SER B:10 , GDU B:300 , HOH B:455 , HOH B:502BINDING SITE FOR RESIDUE SO4 B 302
11BC2SOFTWAREGLY B:66 , GLY B:67 , GLY B:68 , SER B:69 , HOH B:580 , HOH B:657BINDING SITE FOR RESIDUE SO4 B 303
12BC3SOFTWAREARG B:126 , LYS B:127 , SER B:128BINDING SITE FOR RESIDUE SO4 B 304
13BC4SOFTWAREHOH A:411 , GLN B:265 , HOH B:514 , HOH B:586 , HOH B:647BINDING SITE FOR RESIDUE SO4 B 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HO9)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Tyr A:15 -Pro A:16
2Tyr B:15 -Pro B:16

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HO9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HO9)

(-) Exons   (0, 0)

(no "Exon" information available for 4HO9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:294
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4ho9a_ A: RmlA (RfbA)                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh...eeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee..hhhhhhhhh........hhhhhhhhhhhh..eeeeee....eeee..hhhhhhhhhhhhhhhhhhh.....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ho9 A   1 MKGIILSGGSGTRLYPLTKVVSKQLLPVYDKPMVYYPLSVLMLAGIKDILIISTPEDTPRFEQLLGGGSELGISLSYAVQSSPDGLAQAFIIGEEFIGDDNVALVLGDNIFYGHGFTELLQRAANRKSGATIFGYNVKDPQRFGVVEFDEKGKVISIEEKPEEPKSSYAVTGLYFYDNRVVDIAKNITPSARGELEITDVNKAYLELGELHVELLGRGFAWLDTGTHESLLQASQFIETIEKRQSLKVACLEEIAYRMGYISREQLIKLAEPLMKNEYGQYLMNLAHRSKDLVT 294
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290    


Chain B from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4ho9b_ B: RmlA (RfbA)                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee.........hhhhh.hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.....hhhhhhhhhhhhhh...eeeee..eeee..hhhhhhhhhhhh...eeeeee...hhhh.eeeee.....eeeeee.........eeeeeeee..hhhhhhhhh........hhhhhhhhhhhh..eeeeee....eeee..hhhhhhhhhhhhhhhhhhh.....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ho9 B   1 MKGIILSGGSGTRLYPLTKVVSKQLLPVYDKPMVYYPLSVLMLAGIKDILIISTPEDTPRFEQLLGGGSELGISLSYAVQSSPDGLAQAFIIGEEFIGDDNVALVLGDNIFYGHGFTELLQRAANRKSGATIFGYNVKDPQRFGVVEFDEKGKVISIEEKPEEPKSSYAVTGLYFYDNRVVDIAKNITPSARGELEITDVNKAYLELGELHVELLGRGFAWLDTGTHESLLQASQFIETIEKRQSLKVACLEEIAYRMGYISREQLIKLAEPLMKNEYGQYLMNLAHR 288
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HO9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HO9)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        Q9AGY4_ANETH | Q9AGY4: 4ho0 4ho2 4ho3 4ho4 4ho5 4ho6 4ho8 4hoc

(-) Related Entries Specified in the PDB File

4ho0 4ho2 4ho3 4ho4 4ho5 4ho6 4ho8 4hoc