4HO4 - JenaLib

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Title :   CRYSTAL STRUCTURE OF GLUCOSE 1-PHOSPHATE THYMIDYLYLTRANSFERASE FROM ANEURINIBACILLUS THERMOAEROPHILUS COMPLEXED WITH THYMIDINE AND GLUCOSE-1-PHOSPHATE

Authors :   T. J. Chen, W. T. Chien, C. C. Lin, W. C. Wang

Date :   22 Oct 12 (Deposition) - 23 Oct 13 (Release) - 23 Oct 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.64

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (2x)

Keywords :   Thymidylyltransferase, Nucleotide Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. J. Chen, W. T. Chien, C. C. Lin, W. C. Wang
Crystal Structure Of Glucose 1-Phosphate Thymidylyltransferase From Aneurinibacillus Thermoaerophilu Complexed With Thymidine And Glucose-1-Phosphate
To Be Published
PubMed: search

Molecule 1 - GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE
	Chains	:	A, B
	EC Number	:	2.7.7.24
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PTXB1
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	RMLA
	Organism Scientific	:	ANEURINIBACILLUS THERMOAEROPHILUS
	Organism Taxid	:	143495

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 9)

No.	Name	Count	Type	Full Name
1	G1P	1	Ligand/Ion	ALPHA-D-GLUCOSE-1-PHOSPHATE
2	SO4	4	Ligand/Ion	SULFATE ION
3	THM	4	Ligand/Ion	THYMIDINE

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	G1P	1	Ligand/Ion	ALPHA-D-GLUCOSE-1-PHOSPHATE
2	SO4	2	Ligand/Ion	SULFATE ION
3	THM	2	Ligand/Ion	THYMIDINE

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	G1P	-1	Ligand/Ion	ALPHA-D-GLUCOSE-1-PHOSPHATE
2	SO4	2	Ligand/Ion	SULFATE ION
3	THM	2	Ligand/Ion	THYMIDINE

Biological Unit 3 (3, 18)

No.	Name	Count	Type	Full Name
1	G1P	2	Ligand/Ion	ALPHA-D-GLUCOSE-1-PHOSPHATE
2	SO4	8	Ligand/Ion	SULFATE ION
3	THM	8	Ligand/Ion	THYMIDINE

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:86 , LEU A:106 , ASN A:109 , PHE A:143 , GLY A:144 , GLU A:159 , LYS A:160 , VAL A:170 , TRP A:221 , THM A:302 , HOH A:403 , HOH A:422 , HOH A:464 , HOH A:520 , HOH A:523 , HOH A:619	BINDING SITE FOR RESIDUE G1P A 301
2	AC2	SOFTWARE	LEU A:6 , GLY A:8 , GLY A:9 , GLN A:24 , GLN A:80 , PRO A:83 , ASP A:84 , GLY A:85 , LEU A:86 , GLY A:107 , ASP A:108 , G1P A:301 , HOH A:422	BINDING SITE FOR RESIDUE THM A 302
3	AC3	SOFTWARE	LEU A:43 , TYR A:112 , GLY A:113 , ALA A:249 , GLU A:253 , ILE A:254 , ARG A:257 , HOH A:404 , HOH A:415 , HOH A:424 , HOH A:434 , HOH A:626 , ARG B:217	BINDING SITE FOR RESIDUE THM A 303
4	AC4	SOFTWARE	GLY A:67 , GLY A:68 , SER A:69 , HOH A:562	BINDING SITE FOR RESIDUE SO4 A 304
5	AC5	SOFTWARE	ARG A:126 , LYS A:127 , SER A:128 , HOH A:552 , HOH A:565 , LYS B:268	BINDING SITE FOR RESIDUE SO4 A 305
6	AC6	SOFTWARE	LEU B:6 , GLY B:8 , GLY B:9 , GLN B:80 , PRO B:83 , ASP B:84 , GLY B:85 , ASP B:108 , HOH B:424	BINDING SITE FOR RESIDUE THM B 301
7	AC7	SOFTWARE	ARG A:217 , LEU B:43 , TYR B:112 , GLY B:113 , ALA B:249 , GLU B:253 , ILE B:254 , ARG B:257 , GLU B:296 , HOH B:405 , HOH B:406 , HOH B:407 , HOH B:426 , HOH B:440	BINDING SITE FOR RESIDUE THM B 302
8	AC8	SOFTWARE	GLY B:67 , GLY B:68 , SER B:69	BINDING SITE FOR RESIDUE SO4 B 303
9	AC9	SOFTWARE	ARG B:126 , LYS B:127 , SER B:128 , HOH B:608	BINDING SITE FOR RESIDUE SO4 B 304

(no "SS Bond" information available for 4HO4)

Asymmetric Unit

No.	Residues
1	Tyr A:15	-	Pro A:16
2	Tyr B:15	-	Pro B:16

(no "SAP(SNP)/Variant" information available for 4HO4)

(no "PROSITE Motif" information available for 4HO4)

(no "Exon" information available for 4HO4)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:289
                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4ho4a_ A: RmlA (RfbA)                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh...eeeee..eeee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee..hhhhhhhh.........hhhhhhhhhhhh..eeeee.....eeee..hhhhhhhhhhhhhhhhhhh.....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ho4 A   1 MKGIILSGGSGTRLYPLTKVVSKQLLPVYDKPMVYYPLSVLMLAGIKDILIISTPEDTPRFEQLLGGGSELGISLSYAVQSSPDGLAQAFIIGEEFIGDDNVALVLGDNIFYGHGFTELLQRAANRKSGATIFGYNVKDPQRFGVVEFDEKGKVISIEEKPEEPKSSYAVTGLYFYDNRVVDIAKNITPSARGELEITDVNKAYLELGELHVELLGRGFAWLDTGTHESLLQASQFIETIEKRQSLKVACLEEIAYRMGYISREQLIKLAEPLMKNEYGQYLMNLAHRS 289
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280

Chain B from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4ho4b_ B: RmlA (RfbA)                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...............hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh...eeeee...eee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee..hhhhhhhh.........hhhhhhhhhhhh..eeeeee....eee...hhhhhhhhhhhhhhhhhhh.....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ho4 B   1 MKGIILSGGSGTRLYPLTKVVSKQLLPVYDKPMVYYPLSVLMLAGIKDILIISTPEDTPRFEQLLGGGSELGISLSYAVQSSPDGLAQAFIIGEEFIGDDNVALVLGDNIFYGHGFTELLQRAANRKSGATIFGYNVKDPQRFGVVEFDEKGKVISIEEKPEEPKSSYAVTGLYFYDNRVVDIAKNITPSARGELEITDVNKAYLELGELHVELLGRGFAWLDTGTHESLLQASQFIETIEKRQSLKVACLEEIAYRMGYISREQLIKLAEPLMKNEYGQYLMNLAHRSKDLVTVEG 297
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Nucleotide-diphospho-sugar transferases (408)

Superfamily: Nucleotide-diphospho-sugar transferases (408)

Family: glucose-1-phosphate thymidylyltransferase (43)

Protein domain: RmlA (RfbA) (27)

Aneurinibacillus thermoaerophilus [TaxId: 143495] (9)

1a	d4ho4a_	A:
1b	d4ho4b_	B:

(no "CATH Domain" information available for 4HO4)

(no "Pfam Domain" information available for 4HO4)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
		Tyr A:15 - Pro A:16	[ RasMol ]
		Tyr B:15 - Pro B:16	[ RasMol ]

Biological Units
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Description

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Ligands, Modified Residues, Ions (3, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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