4HO6 - JenaLib

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Title :   CRYSTAL STRUCTURE OF GLUCOSE 1-PHOSPHATE THYMIDYLYLTRANSFERASE FROM ANEURINIBACILLUS THERMOAEROPHILUS COMPLEXED WITH UDP-GLUCOSE AND UTP

Authors :   T. J. Chen, W. T. Chien, C. C. Lin, W. C. Wang

Date :   22 Oct 12 (Deposition) - 23 Oct 13 (Release) - 23 Oct 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.92

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (4x)

Keywords :   Thymidylyltransferase, Nucleotide Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. J. Chen, W. T. Chien, C. C. Lin, W. C. Wang
Crystal Structure Of Glucose 1-Phosphate Thymidylyltransferase From Aneurinibacillus Thermoaerophilu Complexed With Udp-Glucose And Utp
To Be Published
PubMed: search

Molecule 1 - GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE
	Chains	:	A
	EC Number	:	2.7.7.24
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PTXB1
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	RMLA
	Organism Scientific	:	ANEURINIBACILLUS THERMOAEROPHILUS
	Organism Taxid	:	143495

		1
Asymmetric Unit	:	A
Biological Unit 1 (1x)	:	A
Biological Unit 2 (4x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 4)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION
2	UPG	1	Ligand/Ion	URIDINE-5'-DIPHOSPHATE-GLUCOSE
3	UTP	1	Ligand/Ion	URIDINE 5'-TRIPHOSPHATE

Biological Unit 1 (3, 4)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION
2	UPG	1	Ligand/Ion	URIDINE-5'-DIPHOSPHATE-GLUCOSE
3	UTP	1	Ligand/Ion	URIDINE 5'-TRIPHOSPHATE

Biological Unit 2 (3, 16)

No.	Name	Count	Type	Full Name
1	SO4	8	Ligand/Ion	SULFATE ION
2	UPG	4	Ligand/Ion	URIDINE-5'-DIPHOSPHATE-GLUCOSE
3	UTP	4	Ligand/Ion	URIDINE 5'-TRIPHOSPHATE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:6 , GLY A:8 , GLY A:9 , GLN A:80 , PRO A:83 , ASP A:84 , GLY A:85 , LEU A:106 , ASP A:108 , PHE A:143 , GLY A:144 , GLU A:159 , LYS A:160 , VAL A:170 , ARG A:192 , HOH A:402 , HOH A:403 , HOH A:408 , HOH A:411 , HOH A:413 , HOH A:526	BINDING SITE FOR RESIDUE UPG A 300
2	AC2	SOFTWARE	LEU A:43 , TYR A:112 , GLY A:113 , HIS A:114 , GLY A:115 , PHE A:116 , THR A:117 , GLY A:216 , ARG A:217 , GLY A:218 , VAL A:248 , ALA A:249 , GLU A:253 , ILE A:254 , ARG A:257 , HOH A:406 , HOH A:418 , HOH A:427 , HOH A:432 , HOH A:466 , HOH A:472 , HOH A:516 , HOH A:549 , HOH A:576	BINDING SITE FOR RESIDUE UTP A 301
3	AC3	SOFTWARE	GLY A:11 , THR A:12 , ARG A:13	BINDING SITE FOR RESIDUE SO4 A 302
4	AC4	SOFTWARE	GLY A:66 , GLY A:67 , SER A:69 , TYR A:77 , ALA A:78 , VAL A:79 , HOH A:473 , HOH A:512 , HOH A:563	BINDING SITE FOR RESIDUE SO4 A 303

(no "SS Bond" information available for 4HO6)

Asymmetric Unit

No.	Residues
1	Tyr A:15	-	Pro A:16

(no "SAP(SNP)/Variant" information available for 4HO6)

(no "PROSITE Motif" information available for 4HO6)

(no "Exon" information available for 4HO6)

Asymmetric Unit

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Chain A from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4ho6a_ A: RmlA (RfbA)                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee....hhhhh......hhhh.ee..ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhh.hhhhh.eeeeee.......hhhhhhhhhhhh...eeeee...eee..hhhhhhhhhhhh...eeeeeee..hhhh.eeeee.....eeeeee........eeeeeeeee..hhhhhhhhh........hhhhhhhhhhhh..eeeeee....eee...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ho6 A   1 MKGIILSGGSGTRLYPLTKVVSKQLLPVYDKPMVYYPLSVLMLAGIKDILIISTPEDTPRFEQLLGGGSELGISLSYAVQSSPDGLAQAFIIGEEFIGDDNVALVLGDNIFYGHGFTELLQRAANRKSGATIFGYNVKDPQRFGVVEFDEKGKVISIEEKPEEPKSSYAVTGLYFYDNRVVDIAKNITPSARGELEITDVNKAYLELGELHVELLGRGFAWLDTGTHESLLQASQFIETIEKRQSLKVACLEEIAYRMGYISREQLIKLAEPLMKNEYGQYLMNLAHR 288
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Nucleotide-diphospho-sugar transferases (408)

Superfamily: Nucleotide-diphospho-sugar transferases (408)

Family: glucose-1-phosphate thymidylyltransferase (43)

Protein domain: RmlA (RfbA) (27)

Aneurinibacillus thermoaerophilus [TaxId: 143495] (9)

d4ho6a_

(no "CATH Domain" information available for 4HO6)

(no "Pfam Domain" information available for 4HO6)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Sites
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	Cis Peptide Bonds
		Tyr A:15 - Pro A:16	[ RasMol ]

Biological Units
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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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Description

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Ligands, Modified Residues, Ions (3, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

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