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(-) Description

Title :  CRYSTAL STRUCTURE OF H112W MUTANT OF BORNA DISEASE VIRUS MATRIX PROTEIN
 
Authors :  P. Dautel, P. Kolenko, M. T. Stubbs
Date :  11 Oct 12  (Deposition) - 30 Oct 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (3x)
Keywords :  Viral Matrix Protein, Rna Binding, Membrane Binding, Viruses, Ssrna Negative-Strand Viruses, Mononegavirales; Bornaviridae, Bornavirus, Virion, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Dautel, P. Kolenko, M. T. Stubbs
Matrix Protein Variants Provide Support For Alternative Borna Disease Virus Infection Pathway
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MATRIX PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMAL-C2
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: M
    Mutation: YES
    Organism Common: BDV
    Organism Scientific: BORNA DISEASE VIRUS
    Organism Taxid: 12455
    Synonym: GP18, P16

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (3x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
13GP2Ligand/IonGUANOSINE-3'-MONOPHOSPHATE
2CL5Ligand/IonCHLORIDE ION
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
13GP6Ligand/IonGUANOSINE-3'-MONOPHOSPHATE
2CL-1Ligand/IonCHLORIDE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:64 , VAL A:65 , ALA A:117 , PHE A:118 , ASN A:119 , VAL A:120 , ILE D:128 , GLY D:129 , VAL D:130 , GLY D:131BINDING SITE FOR RESIDUE 3GP A 201
2AC2SOFTWAREGLU A:9 , LYS A:11 , HOH A:312BINDING SITE FOR RESIDUE CL A 202
3AC3SOFTWAREGLY A:129 , VAL A:130 , GLY A:131 , ASP B:64 , VAL B:65 , GLU B:66 , ALA B:117 , PHE B:118 , ASN B:119 , VAL B:120BINDING SITE FOR RESIDUE 3GP B 201
4AC4SOFTWAREGLU B:9BINDING SITE FOR RESIDUE CL B 202
5AC5SOFTWARELYS B:13BINDING SITE FOR RESIDUE CL B 203
6AC6SOFTWARELYS C:11 , ASP C:12 , LYS C:13BINDING SITE FOR RESIDUE CL C 201
7AC7SOFTWARELEU C:57 , ARG C:124 , LEU C:125BINDING SITE FOR RESIDUE CL C 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HI6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HI6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HI6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HI6)

(-) Exons   (0, 0)

(no "Exon" information available for 4HI6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee.hhhhh.....eeeeeeee.........eeeeeee...........hhhhheeeeeee.....eeeeeeehhhhhhhhhhhh........eeeee.hhhhhhhhhhh...eeeeeeeee....hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hi6 A   5 HSYVELKDKVIVPGWPTLMLEIDFVGGTSRNQFLNIPFLSVKEPLQLPREKKLTDYFTIDVEPAGHSLVNIYFQIDDFLLLTLNSLSVYKDPIRKYMFLRLNKEQSKWAINAAFNVFSYRLRNIGVGPLGPDIRSSGP 142
                                    14        24        34        44        54        64        74        84        94       104       114       124       134        


Chain B from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.hhhhh.....eeeeeeee.........eeeeeee...........hhhh.eeeeeee.....eeeeeeehhhhhhhhhhhh........eeeee.hhhhhhhhhhh...eeeeeeeee....hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hi6 B   4 KHSYVELKDKVIVPGWPTLMLEIDFVGGTSRNQFLNIPFLSVKEPLQLPREKKLTDYFTIDVEPAGHSLVNIYFQIDDFLLLTLNSLSVYKDPIRKYMFLRLNKEQSKWAINAAFNVFSYRLRNIGVGPLGPDIRSS 140
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       


Chain C from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.hhhhh.....eeeeeeee.........eeeeeee...........hhhh.eeeeeee.....eeeeeeehhhhhhhhhhhh........eeeeeehhhhhhhhhh....eeeeeeeee....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hi6 C   5 HSYVELKDKVIVPGWPTLMLEIDFVGGTSRNQFLNIPFLSVKEPLQLPREKKLTDYFTIDVEPAGHSLVNIYFQIDDFLLLTLNSLSVYKDPIRKYMFLRLNKEQSKWAINAAFNVFSYRLRNIGVGPLGPDIRSS 140
                                    14        24        34        44        54        64        74        84        94       104       114       124       134      


Chain D from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.hhhhh.....eeeeeeee..eeeeeee...........hhhh.eeeeeee.....eeeeeeehhhhhhhhhhhh........eeeee.hhhhhhhhhhh...eeeeeeeee....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hi6 D   5 HSYVELKDKVIVPGWPTLMLEIDFVFLNIPFLSVKEPLQLPREKKLTDYFTIDVEPAGHSLVNIYFQIDDFLLLTLNSLSVYKDPIRKYMFLRLNKEQSKWAINAAFNVFSYRLRNIGVGPLGPDIRSS 140
                                    14        24    ||  41        51        61        71        81        91       101       111       121       131         
                                                   29|                                                                                                       
                                                    37
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HI6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HI6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HI6)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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  MATRX_BDV1 | P0C794
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MATRX_BDV1 | P0C794: 3f1j 4hi5 4hit 4hiu 4hiw 4hiy

(-) Related Entries Specified in the PDB File

3f1j WILD TYPE
4hi5
4hit
4hiu
4hiw
4hiy