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(-) Description

Title :  CRYSTAL STRUCTURE OF H112W MUTANT OF BORNA DISEASE VIRUS MATRIX PROTEIN
 
Authors :  P. Dautel, P. Kolenko, M. T. Stubbs
Date :  12 Oct 12  (Deposition) - 30 Oct 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (3x)
Keywords :  Viral Matrix Protein, Rna Binding, Membrane Binding, Viruses, Ssrna, Negative-Strand Viruses, Mononegavirales, Bornaviridae, Borna Virus, Virion, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Dautel, P. Kolenko, M. T. Stubbs
Matrix Protein Variants Provide Support For Alternative Borna Disease Virus Infection Pathway
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MATRIX PROTEIN
    Chains: A, D, C, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMAL-C2
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: M
    Mutation: YES
    Organism Common: BDV
    Organism Scientific: BORNA DISEASE VIRUS
    Organism Taxid: 12455
    Synonym: GP18, P16

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (3x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric Unit (2, 11)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2SO49Ligand/IonSULFATE ION
Biological Unit 1 (1, 27)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2SO427Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:57 , ARG A:124 , LEU A:125BINDING SITE FOR RESIDUE CL A 201
02AC2SOFTWAREASN A:106 , LYS A:107 , HOH A:339 , LYS B:107 , SO4 B:203BINDING SITE FOR RESIDUE SO4 A 202
03AC3SOFTWARELEU C:72 , ASN C:106 , LYS C:107 , GLU C:108 , HOH C:301 , LYS D:107BINDING SITE FOR RESIDUE SO4 D 201
04AC4SOFTWARELYS D:11 , LYS D:13BINDING SITE FOR RESIDUE SO4 D 202
05AC5SOFTWAREARG D:34BINDING SITE FOR RESIDUE CL D 203
06AC6SOFTWAREARG C:126 , ASN C:127BINDING SITE FOR RESIDUE SO4 C 201
07AC7SOFTWAREGLU C:54 , ARG D:126 , ASN D:127 , HOH D:321BINDING SITE FOR RESIDUE SO4 C 202
08AC8SOFTWARELYS C:111 , TRP C:112 , GLN D:36 , LYS D:111BINDING SITE FOR RESIDUE SO4 C 203
09AC9SOFTWAREASP B:80 , ASP B:81 , LYS B:99BINDING SITE FOR RESIDUE SO4 B 201
10BC1SOFTWAREGLN B:50 , ARG B:126 , ASN B:127BINDING SITE FOR RESIDUE SO4 B 202
11BC2SOFTWARELYS A:107 , SO4 A:202 , LYS B:107 , HOH B:303 , HOH B:304 , LYS D:107BINDING SITE FOR RESIDUE SO4 B 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HIT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HIT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HIT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HIT)

(-) Exons   (0, 0)

(no "Exon" information available for 4HIT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.hhhhh.....eeeeeeee.........eeeeeee...........hhhh.eeeeeee.....eeeeeeehhhhhhhhhhhh........eeeee.hhhhhhhhhhh...eeeeeeeee....hhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hit A   5 HSYVELKDKVIVPGWPTLMLEIDFVGGTSRNQFLNIPFLSVKEPLQLPREKKLTDYFTIDVEPAGHSLVNIYFQIDDFLLLTLNSLSVYKDPIRKYMFLRLNKEQSKWAINAAFNVFSYRLRNIGVGPLGPDIRS 139
                                    14        24        34        44        54        64        74        84        94       104       114       124       134     


Chain B from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.hhhhh.....eeeeeeee..eeeeeeee...........hhhh.eeeeeee.....eeeeeeehhhhhhhhhhhh........eeeee.hhhhhhhhhhh...eeeeeeeee....hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hit B   5 HSYVELKDKVIVPGWPTLMLEIDFVQFLNIPFLSVKEPLQLPREKKLTDYFTIDVEPAGHSLVNIYFQIDDFLLLTLNSLSVYKDPIRKYMFLRLNKEQSKWAINAAFNVFSYRLRNIGVGPLGPDIR 138
                                    14        24    ||  40        50        60        70        80        90       100       110       120       130        
                                                   29|                                                                                                      
                                                    36                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhhhh.....eeeeeeee...eeeeee.............eeeeeee.....eeeeeeehhhhhhhhhhhh........eeeee.hhhhhhhhhhh...eeeeeeeee....hhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hit C   6 SYVELKDKVIVPGWPTLMLEIDFVGLNIPFLSVKEPLQLPREKDYFTIDVEPAGHSLVNIYFQIDDFLLLTLNSLSVYKDPIRKYMFLRLNKEQSKWAINAAFNVFSYRLRNIGVGPLGPDIRS 139
                                    15        25    ||  42        52  ||    65        75        85        95       105       115       125       135    
                                                   30|               55|                                                                                
                                                    38                59                                                                                


Chain D from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.hhhhh.....eeeeeeee.........eeeeeee...........hhhh.eeeeeee.....eeeeeeehhhhhhhhhhhh........eeeee.hhhhhhhhhhh...eeeeeeeee....hhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hit D   5 HSYVELKDKVIVPGWPTLMLEIDFVGGTSRNQFLNIPFLSVKEPLQLPREKKLTDYFTIDVEPAGHSLVNIYFQIDDFLLLTLNSLSVYKDPIRKYMFLRLNKEQSKWAINAAFNVFSYRLRNIGVGPLGPDIRS 139
                                    14        24        34        44        54        64        74        84        94       104       114       124       134
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HIT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HIT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HIT)

(-) Gene Ontology  (3, 3)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MATRX_BDV1 | P0C794: 3f1j 4hi5 4hi6 4hiu 4hiw 4hiy

(-) Related Entries Specified in the PDB File

4hiy
3f1j WILD-TYPE
4hi5
4hi6
4hiu
4hiw