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(-) Description

Title :  CRYSTAL STRUCTURE OF R34/53A MUTANT OF BORNA DISEASE VIRUS MATRIX PROTEIN
 
Authors :  P. Dautel, P. Kolenko, M. T. Stubbs
Date :  12 Oct 12  (Deposition) - 30 Oct 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Viral Matrix Protein, Rna Binding, Membrane Binding, Viruses, Ssrna, Negative-Strand Viruses, Mononegavirales, Bornaviridae, Borna Virus, Virion, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Dautel, P. Kolenko, M. T. Stubbs
Matrix Protein Variants Provide Support For Alternative Borna Disease Virus Infection Pathway
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MATRIX PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMAL-C2
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: M
    Mutation: YES
    Organism Common: BDV
    Organism Scientific: BORNA DISEASE VIRUS
    Organism Taxid: 12455
    Synonym: GP18, P16

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
15GP1Ligand/IonGUANOSINE-5'-MONOPHOSPHATE
2C5P1Ligand/IonCYTIDINE-5'-MONOPHOSPHATE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
15GP4Ligand/IonGUANOSINE-5'-MONOPHOSPHATE
2C5P4Ligand/IonCYTIDINE-5'-MONOPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:36 , PHE A:37 , LYS A:111 , HIS A:112 , ASN A:115BINDING SITE FOR RESIDUE C5P A 300
2AC2SOFTWAREASP A:64 , VAL A:65 , GLU A:66 , ALA A:117 , PHE A:118 , ASN A:119 , VAL A:120 , ILE A:128 , GLY A:129 , VAL A:130 , GLY A:131BINDING SITE FOR RESIDUE 5GP A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HIU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HIU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HIU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HIU)

(-) Exons   (0, 0)

(no "Exon" information available for 4HIU)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee.hhhhh.....eeeeeeee...eeeeeeee...........hhhh.eeeeeee.....eeeeeeehhhhhhhhhhhh........eeeee.hhhhhhhhhhh...eeeeeeeee....hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hiu A   4 KHSYVELKDKVIVPGWPTLMLEIDFVNQFLNIPFLSVKEPLQLPAEKKLTDYFTIDVEPAGHSLVNIYFQIDDFLLLTLNSLSVYKDPIRKYMFLRLNKEQSKHAINAAFNVFSYRLRNIGVGPLGPDIRSS 140
                                    13        23     || 38        48        58        68        78        88        98       108       118       128       138  
                                                    29|                                                                                                         
                                                     35
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HIU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HIU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HIU)

(-) Gene Ontology  (3, 3)

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  4hiu
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  MATRX_BDV1 | P0C794
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MATRX_BDV1 | P0C794: 3f1j 4hi5 4hi6 4hit 4hiw 4hiy

(-) Related Entries Specified in the PDB File

3f1j WILD-TYPE
4hi5
4hi6
4hit
4hiw
4hiy