4H0W - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   BISMUTH BOUND HUMAN SERUM TRANSFERRIN

Authors :   N. Yang, H. Zhang, M. Wang, Q. Hao, H. Sun

Date :   10 Sep 12 (Deposition) - 26 Dec 12 (Release) - 16 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym./Biol. Unit : A

Keywords :   Bismuth, Iron Transporter, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Yang, H. Zhang, M. Wang, Q. Hao, H. Sun
Iron And Bismuth Bound Human Serum Transferrin Reveals A Partially-Opened Conformation In The N-Lobe.
Sci Rep V. 2 999 2012
PubMed-ID: 23256035 | Reference-DOI: 10.1038/SREP00999

Molecule 1 - SEROTRANSFERRIN
	Chains	:	A
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	BLOOD
	Synonym	:	TRANSFERRIN, BETA-1 METAL-BINDING GLOBULIN, SIDEROPHILIN

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (5, 6)

No.	Name	Count	Type	Full Name
1	BS3	1	Ligand/Ion	BISMUTH(III) ION
2	CO3	2	Ligand/Ion	CARBONATE ION
3	FE	1	Ligand/Ion	FE (III) ION
4	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	NTA	1	Ligand/Ion	NITRILOTRIACETIC ACID

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:392 , TYR A:426 , TYR A:517 , HIS A:585 , CO3 A:702	BINDING SITE FOR RESIDUE FE A 701
2	AC2	SOFTWARE	ASP A:392 , TYR A:426 , THR A:452 , ARG A:456 , THR A:457 , ALA A:458 , GLY A:459 , TYR A:517 , FE A:701	BINDING SITE FOR RESIDUE CO3 A 702
3	AC3	SOFTWARE	TYR A:188 , CO3 A:704 , NTA A:706 , HOH A:901	BINDING SITE FOR RESIDUE BS3 A 703
4	AC4	SOFTWARE	THR A:120 , ARG A:124 , SER A:125 , ALA A:126 , GLY A:127 , TYR A:188 , BS3 A:703 , NTA A:706	BINDING SITE FOR RESIDUE CO3 A 704
5	AC5	SOFTWARE	ASN A:413 , SER A:415	BINDING SITE FOR RESIDUE NAG A 705
6	AC6	SOFTWARE	ASP A:63 , TYR A:95 , SER A:125 , TYR A:188 , LYS A:206 , LYS A:296 , BS3 A:703 , CO3 A:704 , HOH A:901 , HOH A:903	BINDING SITE FOR RESIDUE NTA A 706

Asymmetric/Biological Unit

No.	Residues
1	A:9	-	A:48
2	A:19	-	A:39
3	A:118	-	A:194
4	A:137	-	A:331
5	A:158	-	A:174
6	A:161	-	A:179
7	A:171	-	A:177
8	A:227	-	A:241
9	A:339	-	A:596
10	A:345	-	A:377
11	A:355	-	A:368
12	A:402	-	A:674
13	A:418	-	A:637
14	A:450	-	A:523
15	A:474	-	A:665
16	A:484	-	A:498
17	A:495	-	A:506
18	A:563	-	A:577
19	A:615	-	A:620

Asymmetric/Biological Unit

No.	Residues
1	Ala A:73	-	Pro A:74
2	Glu A:141	-	Pro A:142
3	Lys A:144	-	Pro A:145
4	Ala A:334	-	Pro A:335
5	Pro A:335	-	Thr A:336
6	Thr A:336	-	Asp A:337
7	Ser A:624	-	Glu A:625

(no "SAP(SNP)/Variant" information available for 4H0W)

(no "PROSITE Motif" information available for 4H0W)

(no "Exon" information available for 4H0W)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:679
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4h0wa1 A:1-334 automated matches                                                                                                                                                                                                                                                                                                             d4h0wa2 A:335-679 automated matches                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.hhhhhhhhhhhhhhhhhhh.....eeeeee..hhhhhhhhhhh.....eeehhhhhhhhhh....eeeeeeee.........eeeeeeeee.....hhhhh...eee.........hhhhhhhhhhhh.....hhhhhhhhhh.eee........hhhhhh.............hhhhhhhhhhhh....eeeeehhhhhhhh.hhhhhh.eeee.....eehhhhhhhh..eeee..eeeee....hhhhhhhhhhhhhhhhh.........................eeee.....hhhhhhhhhhhhhhhhhhhh............eeeeeehhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh....eeeehhhhhhhhhhh..eeeeeee..............eeeeeeee..............eeee........hhhhhhhhhhhhh..hhhhhh.eee.......hhhhh....hhhhh.........hhhhhhhhhhhhh..eeeee.hhhhhhh............hhh.eeee.....eee.hhhhhh..eee...eeee...hhhhhhhhhhhhhhhhh...........................eeee.....hhhhhhhhhhhhhhhh......hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h0w A   1 VPDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPEPRKPLEKAVANFFSGSCAPCADGTDFPQLCQLCPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGGKEDLIWELLNQAQEHFGKDKSKEFQLFSSPHGKDLLFKDSAHGFLKVPPRMDAKMYLGYEYVTAIRNLREGTCPEAPTDECKPVKWCALSHHERLKCDEWSVNSVGKIECVSAETTEDCIAKIMNGEADAMSLDGGFVYIAGKCGLVPVLAENYNKSDNCEDTPEAGYFAIAVVKKSASDLTWDNLKGKKSCHTAVGRTAGWNIPMGLLYNKINHCRFDEFFSEGCAPGSKKDSSLCKLCMGSGLNLCEPNNKEGYYGYTGAFRCLVEKGDVAFVKHQTVPQNTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQQQHLFGSNVTDCSGNFCLFRSETKDLLFRDDTVCLAKLHDRNTYEKYLGEEYVKAVGNLRKCSTSSLLEACTFRRP 679
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Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: Periplasmic binding protein-like II (813)

Superfamily: Periplasmic binding protein-like II (813)

Family: automated matches (267)

Protein domain: automated matches (267)

Human (Homo sapiens) [TaxId: 9606] (12)

1a	d4h0wa1	A:1-334
1b	d4h0wa2	A:335-679

(no "CATH Domain" information available for 4H0W)

(no "Pfam Domain" information available for 4H0W)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Ala A:334 - Pro A:335	[ RasMol ]
		Ala A:73 - Pro A:74	[ RasMol ]
		Glu A:141 - Pro A:142	[ RasMol ]
		Lys A:144 - Pro A:145	[ RasMol ]
		Pro A:335 - Thr A:336	[ RasMol ]
		Ser A:624 - Glu A:625	[ RasMol ]
		Thr A:336 - Asp A:337	[ RasMol ]

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3qyt	DIFERRIC HUMAN SERUM TRANSFERRIN WITH PARTIALLY OPENED N- LOBE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 6)

Sites (6, 6)

SS Bonds (19, 19)

Cis Peptide Bonds (7, 7)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 2)

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Gene Ontology (36, 36)

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