Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  DIFERRIC BOUND HUMAN SERUM TRANSFERRIN
 
Authors :  N. Yang, H. Zhang, M. Wang, Q. Hao, H. Sun
Date :  03 Mar 11  (Deposition) - 14 Mar 12  (Release) - 19 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Diferric, Human Transferrin, Intermediate, Iron Transporter, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. Yang, H. Zhang, M. Wang, Q. Hao, H. Sun
Iron And Bismuth Bound Human Serum Transferrin Reveals A Partially-Opened Conformation In The N-Lobe
Sci Rep V. 2 999 2012
PubMed-ID: 23256035  |  Reference-DOI: 10.1038/SREP00999

(-) Compounds

Molecule 1 - SEROTRANSFERRIN
    ChainsA
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsBLOOD
    SynonymSERUM TRANSFERRIN, TRANSFERRIN, BETA-1 METAL-BINDING GLOBULIN, SIDEROPHILIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1CO32Ligand/IonCARBONATE ION
2FE2Ligand/IonFE (III) ION
3NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SO41Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:392 , TYR A:426 , TYR A:517 , HIS A:585 , CO3 A:681BINDING SITE FOR RESIDUE FE A 680
2AC2SOFTWAREASP A:392 , TYR A:426 , THR A:452 , ARG A:456 , ALA A:458 , GLY A:459 , TYR A:517 , HIS A:585 , FE A:680BINDING SITE FOR RESIDUE CO3 A 681
3AC3SOFTWARETYR A:95 , TYR A:188 , CO3 A:683 , SO4 A:686BINDING SITE FOR RESIDUE FE A 682
4AC4SOFTWARETYR A:95 , THR A:120 , ARG A:124 , SER A:125 , ALA A:126 , GLY A:127 , TYR A:188 , FE A:682 , SO4 A:686BINDING SITE FOR RESIDUE CO3 A 683
5AC5SOFTWAREASN A:413BINDING SITE FOR RESIDUE NAG A 684
6AC6SOFTWAREHIS A:606 , ASN A:611BINDING SITE FOR RESIDUE NAG A 685
7AC7SOFTWARETYR A:95 , ARG A:124 , SER A:125 , TYR A:188 , FE A:682 , CO3 A:683BINDING SITE FOR RESIDUE SO4 A 686

(-) SS Bonds  (19, 19)

Asymmetric/Biological Unit
No.Residues
1A:9 -A:48
2A:19 -A:39
3A:118 -A:194
4A:137 -A:331
5A:158 -A:174
6A:161 -A:179
7A:171 -A:177
8A:227 -A:241
9A:339 -A:596
10A:345 -A:377
11A:355 -A:368
12A:402 -A:674
13A:418 -A:637
14A:450 -A:523
15A:474 -A:665
16A:484 -A:498
17A:495 -A:506
18A:563 -A:577
19A:615 -A:620

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Val A:1 -Pro A:2
2Ala A:73 -Pro A:74
3Glu A:141 -Pro A:142
4Lys A:144 -Pro A:145
5Gly A:258 -Lys A:259
6Glu A:333 -Ala A:334
7Ser A:501 -Gly A:502

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (16, 16)

Asymmetric/Biological Unit (16, 16)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_034569R42LTRFE_HUMANPolymorphism41298293AR23L
02UniProtVAR_029280S55RTRFE_HUMANPolymorphism8177318AS36R
03UniProtVAR_034570A76VTRFE_HUMANPolymorphism41298977AA57V
04UniProtVAR_038810D77NTRFE_HUMANDisease (ATRAF)121918681AD58N
05UniProtVAR_011997G142STRFE_HUMANPolymorphism1799830AG123S
06UniProtVAR_011998G277STRFE_HUMANPolymorphism1799899AG258S
07UniProtVAR_007544D296GTRFE_HUMANPolymorphism8177238AD277G
08UniProtVAR_007545H319RTRFE_HUMANPolymorphism41295774AH300R
09UniProtVAR_011999W377CTRFE_HUMANPolymorphism1804498AW358C
10UniProtVAR_058199I448VTRFE_HUMANPolymorphism2692696AV429V
11UniProtVAR_012997A477PTRFE_HUMANDisease (ATRAF)121918679AA458P
12UniProtVAR_034571G562VTRFE_HUMANPolymorphism41296590AG543V
13UniProtVAR_012000P589STRFE_HUMANPolymorphism1049296AP570S
14UniProtVAR_012001T645PTRFE_HUMANPolymorphism1130537AT626P
15UniProtVAR_012998K646ETRFE_HUMANPolymorphism121918678AK627E
16UniProtVAR_012999G671ETRFE_HUMANPolymorphism121918677AG652E

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (4, 7)

Asymmetric/Biological Unit (4, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TRANSFERRIN_LIKE_4PS51408 Transferrin-like domain profile.TRFE_HUMAN25-347
361-683
  2A:6-328
A:342-664
2TRANSFERRIN_LIKE_1PS00205 Transferrin-like domain signature 1.TRFE_HUMAN114-123  1A:95-104
3TRANSFERRIN_LIKE_2PS00206 Transferrin-like domain signature 2.TRFE_HUMAN207-223
536-551
  2A:188-204
A:517-532
4TRANSFERRIN_LIKE_3PS00207 Transferrin-like domain signature 3.TRFE_HUMAN241-271
577-607
  2A:222-252
A:558-588

(-) Exons   (0, 0)

(no "Exon" information available for 3QYT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:679
 aligned with TRFE_HUMAN | P02787 from UniProtKB/Swiss-Prot  Length:698

    Alignment length:679
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689         
           TRFE_HUMAN    20 VPDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPEPRKPLEKAVANFFSGSCAPCADGTDFPQLCQLCPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGGKEDLIWELLNQAQEHFGKDKSKEFQLFSSPHGKDLLFKDSAHGFLKVPPRMDAKMYLGYEYVTAIRNLREGTCPEAPTDECKPVKWCALSHHERLKCDEWSVNSVGKIECVSAETTEDCIAKIMNGEADAMSLDGGFVYIAGKCGLVPVLAENYNKSDNCEDTPEAGYFAIAVVKKSASDLTWDNLKGKKSCHTAVGRTAGWNIPMGLLYNKINHCRFDEFFSEGCAPGSKKDSSLCKLCMGSGLNLCEPNNKEGYYGYTGAFRCLVEKGDVAFVKHQTVPQNTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQQQHLFGSNVTDCSGNFCLFRSETKDLLFRDDTVCLAKLHDRNTYEKYLGEEYVKAVGNLRKCSTSSLLEACTFRRP 698
               SCOP domains d3qyta1 A:1-334 automated matches                                                                                                                                                                                                                                                                                                             d3qyta2 A:335-679 automated matches                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.hhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhh.....eeehhhhhhhhhh....eeeeeeee.........eeeeeeeee.....hhhhh....ee.........hhhhhhhhhhhh.....hhhhhhhhhh..ee........hhhhhh.............hhhhhhhhhhhhh...eeeee.........hhhhhh.eeeee...eeee..hhhhh..eeee..eeeee.....hhhhhhhhhhhhhhhh.........................eeee.....hhhhhhhhhhhhhhhhhhh.............eeeeeehhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhh....eeehhhhhhhhhhh..eeeeeee..............eeeeeeee..............eeee........hhhhhhhhhhhhh..hhhhhh.eee.......hhhhh..................hhhhhhhhhhhhh..eeeee.hhhhhh......hhhhh..hhh.eeee.....eee.hhhhhh..eee...eeeehhhhhhhhhhhhhhhhhhhh...........................eeee.....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------L------------R--------------------VN----------------------------------------------------------------S--------------------------------------------------------------------------------------------------------------------------------------S------------------G----------------------R---------------------------------------------------------C----------------------------------------------------------------------V----------------------------P------------------------------------------------------------------------------------V--------------------------S-------------------------------------------------------PE------------------------E--------------------------- SAPs(SNPs)
                PROSITE (1) -----TRANSFERRIN_LIKE_4  PDB: A:6-328 UniProt: 25-347                                                                                                                                                                                                                                                                                   -------------TRANSFERRIN_LIKE_4  PDB: A:342-664 UniProt: 361-683                                                                                                                                                                                                                                                                                --------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------TRANSFERRI-----------------------------------------------------------------------------------TRANSFERRIN_LIKE_-----------------TRANSFERRIN_LIKE_3             ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRANSFERRIN_LIKE-------------------------TRANSFERRIN_LIKE_3             ------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qyt A   1 VPDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPEPRKPLEKAVANFFSGSCAPCADGTDFPQLCQLCPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGGKEDLIWELLNQAQEHFGKDKSKEFQLFSSPHGKDLLFKDSAHGFLKVPPRMDAKMYLGYEYVTAIRNLREGTCPEAPTDECKPVKWCALSHHERLKCDEWSVNSVGKIECVSAETTEDCIAKIMNGEADAMSLDGGFVYIAGKCGLVPVLAENYNKSDNCEDTPEAGYFAVAVVKKSASDLTWDNLKGKKSCHTAVGRTAGWNIPMGLLYNKINHCRFDEFFSEGCAPGSKKDSSLCKLCMGSGLNLCEPNNKEGYYGYTGAFRCLVEKGDVAFVKHQTVPQNTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQQQHLFGSNVTDCSGNFCLFRSETKDLLFRDDTVCLAKLHDRNTYEKYLGEEYVKAVGNLRKCSTSSLLEACTFRRP 679
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QYT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3QYT)

(-) Gene Ontology  (36, 36)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (TRFE_HUMAN | P02787)
molecular function
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0015091    ferric iron transmembrane transporter activity    Enables the transfer of ferric iron (Fe(III) or Fe3+) ions from one side of a membrane to the other.
    GO:0008198    ferrous iron binding    Interacting selectively and non-covalently with ferrous iron, Fe(II).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:1990459    transferrin receptor binding    Interacting selectively and non-covalently with the transferrin receptor.
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0071281    cellular response to iron ion    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0055072    iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell.
    GO:0006826    iron ion transport    The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0002576    platelet degranulation    The regulated exocytosis of secretory granules containing preformed mediators such as histamine and serotonin by a platelet.
    GO:0048260    positive regulation of receptor-mediated endocytosis    Any process that activates or increases the frequency, rate or extent of receptor mediated endocytosis, the uptake of external materials by cells, utilizing receptors to ensure specificity of transport.
    GO:0031647    regulation of protein stability    Any process that affects the structure and integrity of a protein, altering the likelihood of its degradation or aggregation.
    GO:0001895    retina homeostasis    A tissue homeostatic process involved in the maintenance of an internal equilibrium within the retina of the eye, including control of cellular proliferation and death and control of metabolic function.
    GO:0033572    transferrin transport    The directed movement of transferrin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:1990712    HFE-transferrin receptor complex    A protein complex containing at least HFE and a transferrin receptor (either TFR1/TFRC or TFR2), proposed to play a role in the sensing of transferrin-bound Fe (Fe2-Tf) on the plasma membrane to regulate hepcidin transcription.
    GO:0016324    apical plasma membrane    The region of the plasma membrane located at the apical end of the cell.
    GO:0045178    basal part of cell    The region of a cell situated near the base. For example, in a polarized epithelial cell, the basal surface rests on the basal lamina that separates the epithelium from other tissue.
    GO:0009925    basal plasma membrane    The region of the plasma membrane located at the basal end of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
    GO:0072562    blood microparticle    A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0005905    clathrin-coated pit    A part of the endomembrane system in the form of an invagination of a membrane upon which a clathrin coat forms, and that can be converted by vesicle budding into a clathrin-coated vesicle. Coated pits form on the plasma membrane, where they are involved in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane, in the trans-Golgi network, and on some endosomes.
    GO:0005769    early endosome    A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
    GO:0030139    endocytic vesicle    A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance. Endocytic vesicles fuse with early endosomes to deliver the cargo for further sorting.
    GO:0010008    endosome membrane    The lipid bilayer surrounding an endosome.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0031232    extrinsic component of external side of plasma membrane    The component of a plasma membrane consisting of gene products and protein complexes that are loosely bound to its external surface, but not integrated into the hydrophobic region.
    GO:0005770    late endosome    A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.
    GO:0055037    recycling endosome    An organelle consisting of a network of tubules that functions in targeting molecules, such as receptors transporters and lipids, to the plasma membrane.
    GO:0034774    secretory granule lumen    The volume enclosed by the membrane of a secretory granule.
    GO:0031982    vesicle    Any small, fluid-filled, spherical organelle enclosed by membrane.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CO3  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:73 - Pro A:74   [ RasMol ]  
    Glu A:141 - Pro A:142   [ RasMol ]  
    Glu A:333 - Ala A:334   [ RasMol ]  
    Gly A:258 - Lys A:259   [ RasMol ]  
    Lys A:144 - Pro A:145   [ RasMol ]  
    Ser A:501 - Gly A:502   [ RasMol ]  
    Val A:1 - Pro A:2   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3qyt
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  TRFE_HUMAN | P02787
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  209300
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  TRFE_HUMAN | P02787
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRFE_HUMAN | P027871a8e 1a8f 1b3e 1bp5 1btj 1d3k 1d4n 1dtg 1fqe 1fqf 1jqf 1n7w 1n7x 1n84 1oqg 1oqh 1ryo 1suv 2hau 2hav 2o7u 2o84 3fgs 3s9l 3s9m 3s9n 3skp 3v83 3v89 3v8x 3ve1 4h0w 4x1b 4x1d 5dyh

(-) Related Entries Specified in the PDB File

2hav 4h0w