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(-) Description

Title :  STRUCTURE OF MUTS139F P73 DNA BINDING DOMAIN COMPLEXED WITH 20BP DNA RESPONSE ELEMENT
 
Authors :  A. S. Ethayathulla, H. T. Nguyen, H. Viadiu
Date :  29 Aug 12  (Deposition) - 14 Aug 13  (Release) - 23 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.70
Chains :  Asym./Biol. Unit :  A,B,E,F
Keywords :  Tumor Suppressor, Beta-Immunoglobulin, Transcription Factor, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Ciribilli, P. Monti, A. Bisio, H. T. Nguyen, A. S. Ethayathulla, A. Ramos, G. Foggetti, P. Menichini, D. Menendez, M. A. Resnick, H. Viadiu, G. Fronza, A. Inga
Transactivation Specificity Is Conserved Among P53 Family Proteins And Depends On A Response Element Sequence Code.
Nucleic Acids Res. V. 41 8637 2013
PubMed-ID: 23892287  |  Reference-DOI: 10.1093/NAR/GKT657

(-) Compounds

Molecule 1 - DNA (5'-D(P*GP*AP*AP*CP*AP*TP*GP*TP*TP*C)-3')
    Chains: E, F
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - TUMOR PROTEIN P73
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL-21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 115-312
    Gene: HUMAN P73, P73, TP73
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: P53-LIKE TRANSCRIPTION FACTOR, P53-RELATED PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:194 , HIS A:197 , CYS A:258 , CYS A:262BINDING SITE FOR RESIDUE ZN A 401
2AC2SOFTWARECYS B:194 , HIS B:197 , CYS B:258 , CYS B:262BINDING SITE FOR RESIDUE ZN B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GUQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GUQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GUQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GUQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4GUQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeee.............ee....eeeee....eeeeeee........eeeeeeee.hhhhhh.....hhhhhhhhhhhh.........eee......eeee......eeeeee..........eeeeeee..............eeeeeeee.....eeeeeeeeeeee.hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4guq A 113 EFIPSNTDYPGPHHFEVTFQQSSTAKFATWTYSPLLKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVYKKAEHVTDVVKRCPNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVVVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIITLEMRDGQVLGRRSFEGRICACPGRDRKADEDHYREQ 312
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312


Chain B from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............eee...........eeee....eeeee....eeeeee........eeee.eee.hhhhhh.....hhhhhhhhhhhh.........ee.......eeee......eeeeee..........eeeeeee..............eeeeeeee.....eeeeeeeeeeee.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4guq B 113 EFIPSNTDYPGPHHFEVTFQQSSTAKFATWTYSPLLKKLYCQIAKTCPIQIKVTPPPPGTAIRAMPVYKKAEHVTDVVKRCPNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVVVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIITLEMRDGQVLGRRSFEGRICACPGRDRKADEDHYRE 311
                                   122       132       142       152       162  ||   173       183       193       203       213       223       233       243       253       263       273       283       293       303        
                                                                              165|                                                                                                                                                
                                                                               167                                                                                                                                                


Chain E from PDB  Type:DNA  Length:10
                                          
                 4guq E 400 GAACATGTTC 409
                                   409


Chain F from PDB  Type:DNA  Length:10
                                          
                 4guq F 410 GAACATGTTC 419
                                   419
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GUQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GUQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GUQ)

(-) Gene Ontology  (62, 62)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        P73_HUMAN | O15350: 1cok 1dxs 2kby 2mps 2nb1 2wqi 2wqj 2wtt 2xwc 3vd0 3vd1 3vd2 4a63 4g82 4g83 4guo 5hob 5hoc 5kbd

(-) Related Entries Specified in the PDB File

4g82 CRYSTAL STRUCTURE OF P73 DNA-BINDING DOMAIN TETRAMER BOUND TO A FULL RESPONSE-ELEMENT
4g83 CRYSTAL STRUCTURE OF P73 DNA-BINDING DOMAIN TETRAMER BOUND TO A FULL RESPONSE-ELEMENT