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(-) Description

Title :  STRUCTURE OF P73 DNA BINDING DOMAIN COMPLEX WITH 12 BP DNA
 
Authors :  A. S Ethayathulla, H. Viadiu
Date :  29 Aug 12  (Deposition) - 27 Nov 13  (Release) - 27 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.19
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,B,C,D,E,F,G,H  (1x)
Biol. Unit 2:  I,J,K,L,M,N,O,P  (1x)
Keywords :  Tumor Suppressor, Beta-Immunoglobulin Fold, Dna Binding, Transcription Factor, Dna, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S Ethayathulla, H. Viadiu
Structure Of P73 Dna Binding Domain Complex With 12 Bp Dna
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TUMOR PROTEIN P73
    Chains: A, B, C, D, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28
    Expression System Strain: BL-21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 115-312
    Gene: HUMAN P73, P73, TP73
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: P53-LIKE TRANSCRIPTION FACTOR, P53-RELATED PROTEIN
 
Molecule 2 - DNA (5'-D(*CP*GP*GP*GP*CP*AP*AP*GP*CP*CP*CP*G)-3')
    Chains: E, G, M, O
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - DNA (5'-D(*CP*GP*GP*GP*CP*TP*TP*GP*CP*CP*CP*G)-3')
    Chains: F, H, N, P
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (1x): ABCDEFGH        
Biological Unit 2 (1x):         IJKLMNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1ZN8Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:194 , HIS A:197 , CYS A:258 , CYS A:262BINDING SITE FOR RESIDUE ZN A 401
2AC2SOFTWARECYS B:194 , HIS B:197 , CYS B:258 , CYS B:262BINDING SITE FOR RESIDUE ZN B 401
3AC3SOFTWARECYS C:194 , HIS C:197 , CYS C:258 , CYS C:262BINDING SITE FOR RESIDUE ZN C 401
4AC4SOFTWARECYS D:194 , HIS D:197 , CYS D:258 , CYS D:262BINDING SITE FOR RESIDUE ZN D 401
5AC5SOFTWARECYS I:194 , HIS I:197 , CYS I:258 , CYS I:262BINDING SITE FOR RESIDUE ZN I 401
6AC6SOFTWARECYS J:194 , HIS J:197 , CYS J:258 , CYS J:262BINDING SITE FOR RESIDUE ZN J 401
7AC7SOFTWARECYS K:194 , HIS K:197 , CYS K:258 , CYS K:262BINDING SITE FOR RESIDUE ZN K 401
8AC8SOFTWARECYS L:194 , HIS L:197 , CYS L:258 , CYS L:262BINDING SITE FOR RESIDUE ZN L 401

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1I:194 -I:258
2I:258 -I:262

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ile D:115 -Pro D:116

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GUO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GUO)

(-) Exons   (0, 0)

(no "Exon" information available for 4GUO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:201
                                                                                                                                                                                                                                         
               SCOP domains d4guoa_ A: automated matches                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eee...........eeee....eeee.....eeeeee.........eeeeeeee.hhhhhh.....hhhhhh...............eeee.....eeee......eeeeee..........eeeeeee..............eeeeeeee.....eeeeeeeeeee..hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4guo A 112 HEFIPSNTDYPGPHHFEVTFQQSSTAKSATWTYSPLLKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVYKKAEHVTDVVKRCPNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVVVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIITLEMRDGQVLGRRSFEGRICACPGRDRKADEDHYREQ 312
                                   121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311 


Chain B from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                      
               SCOP domains d4guob_ B: automated matches                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............eee...........eeee....eeee.....eeeeee.........eeeeeeee.hhhhhh.....hhhhhhh..............eee......eeee......eeeeee..........eeeeeee..............eeeeeeeee...eeeeeeeeeeee..hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4guo B 114 FIPSNTDYPGPHHFEVTFQQSSTAKSATWTYSPLLKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVYKKAEHVTDVVKRCPNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVVVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIITLEMRDGQVLGRRSFEGRICACPGRDRKADEDHYRE 311
                                   123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303        


Chain C from PDB  Type:PROTEIN  Length:201
                                                                                                                                                                                                                                         
               SCOP domains d4guoc_ C: automated matches                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eee...........eeee....eeeee....eeeeee.........eeeeeeee.hhhhhh.....hhhhhhh..............eee......eeee......eeeeee..........eeeeeee..............eeeeeeee.....eeeeeeeeeeee.hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4guo C 112 HEFIPSNTDYPGPHHFEVTFQQSSTAKSATWTYSPLLKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVYKKAEHVTDVVKRCPNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVVVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIITLEMRDGQVLGRRSFEGRICACPGRDRKADEDHYREQ 312
                                   121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311 


Chain D from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                      
               SCOP domains d4guod_ D: automated matches                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............eee...........eeee....eeee.....eeeeee........eeeeeeeee............hhhhhhh..............eeee.....eeee......eeeeee..........eeeeeee..............eeeeeeeee......eeeeeeeee..hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4guo D 114 FIPSNTDYPGPHHFEVTFQQSSTAKSATWTYSPLLKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVYKKAEHVTDVVKRCPNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVVVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIITLEMRDGQVLGRRSFEGRICACPGRDRKADEDHYRE 311
                                   123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303        


Chain E from PDB  Type:DNA  Length:12
                                            
                 4guo E 398 CGGGCAAGCCCG 409
                                   407  


Chain F from PDB  Type:DNA  Length:12
                                            
                 4guo F 410 CGGGCTTGCCCG 421
                                   419  


Chain G from PDB  Type:DNA  Length:11
                                           
                 4guo G 501 GGGCAAGCCCG 511
                                   510 


Chain H from PDB  Type:DNA  Length:12
                                            
                 4guo H 512 CGGGCTTGCCCG 523
                                   521  


Chain I from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                      
               SCOP domains d4guoi_ I: automated matches                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eee...........eeee....eeee.....eeeeee.........eeeeeeee............hhhhhhh..............eee......eeee......eeeeee..........eeeeeee..............eeeeeeee.....eeeeeeeeeee..hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4guo I 115 IPSNTDYPGPHHFEVTFQQSSTAKSATWTYSPLLKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVYKKAEHVTDVVKRCPNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVVVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIITLEMRDGQVLGRRSFEGRICACPGRDRKADEDHYREQ 312
                                   124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304        


Chain J from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                       
               SCOP domains d4guoj_ J: automated matches                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................eeee....eeee.....eee...........eeeeeeeee.hhhhh......hhhhhhh..............eee......eeee......eeeeee............eeeee..............eeeeeeeee........eeeeeee..hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4guo J 114 FIPSNTDYPGPHHFEVTFQQSSTAKSATWTYSPLLKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVYKKAEHVTDVVKRCPNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVVVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIITLEMRDGQVLGRRSFEGRICACPGRDRKADEDHYREQ 312
                                   123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303         


Chain K from PDB  Type:PROTEIN  Length:201
                                                                                                                                                                                                                                         
               SCOP domains d4guok_ K: automated matches                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eee...........eeee....eeee.....eeeeee.........eeeeeeee............hhhhhh...............eee......eeee......eeeeee..........eeeeeee..............eeeeeeee.....eeeeeeeeeee..hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4guo K 111 HHEFIPSNTDYPGPHHFEVTFQQSSTAKSATWTYSPLLKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVYKKAEHVTDVVKRCPNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVVVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIITLEMRDGQVLGRRSFEGRICACPGRDRKADEDHYRE 311
                                   120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310 


Chain L from PDB  Type:PROTEIN  Length:201
                                                                                                                                                                                                                                         
               SCOP domains d4guol_ L: automated matches                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeee...........eeee....eeee.....eeeeeee........eeeeeeee............hhhhhhh..............eee......eeee......eeeeee..........eeeeeee..............eeeeeeee.....eeeeeeeeeee....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4guo L 111 HHEFIPSNTDYPGPHHFEVTFQQSSTAKSATWTYSPLLKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVYKKAEHVTDVVKRCPNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVVVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIITLEMRDGQVLGRRSFEGRICACPGRDRKADEDHYRE 311
                                   120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310 


Chain M from PDB  Type:DNA  Length:12
                                            
                 4guo M 600 CGGGCAAGCCCG 611
                                   609  


Chain N from PDB  Type:DNA  Length:12
                                            
                 4guo N 612 CGGGCTTGCCCG 623
                                   621  


Chain O from PDB  Type:DNA  Length:12
                                            
                 4guo O 700 CGGGCAAGCCCG 711
                                   709  


Chain P from PDB  Type:DNA  Length:12
                                            
                 4guo P 712 CGGGCTTGCCCG 723
                                   721
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GUO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GUO)

(-) Gene Ontology  (62, 62)

Asymmetric Unit(hide GO term definitions)

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  4guo
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  P73_HUMAN | O15350
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        P73_HUMAN | O15350: 1cok 1dxs 2kby 2mps 2nb1 2wqi 2wqj 2wtt 2xwc 3vd0 3vd1 3vd2 4a63 4g82 4g83 4guq 5hob 5hoc 5kbd

(-) Related Entries Specified in the PDB File

3vd0 STRUCTURE OF P73 DNA BINDING DOMAIN TETRAMER MODULATES P73 TRANSACTIVATION
3vd1 STRUCTURE OF P73 DNA BINDING DOMAIN TETRAMER MODULATES P73 TRANSACTIVATION
3vd2 STRUCTURE OF P73 DNA BINDING DOMAIN TETRAMER MODULATES P73 TRANSACTIVATION