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(-) Description

Title :  CRYSTAL STRUCTURE OF A PHOSPHOLIPID-LIPOXYGENASE COMPLEX FROM PSEUDOMONAS AERUGINOSA AT 2.0 A (C2221)
 
Authors :  X. Carpena, A. Garreta, S. P. Val-Moraes, Q. Garcia-Fernandez, I. Fita
Date :  13 Jul 12  (Deposition) - 06 Nov 13  (Release) - 25 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.03
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Non-Heme Iron Enzyme, Protein-Phospholipid Complex, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Garreta, S. P. Val-Moraes, Q. Garcia-Fernandez, M. Busquets, C. Juan, A. Oliver, A. Ortiz, B. J. Gaffney, I. Fita, A. Manresa, X. Carpena
Structure And Interaction With Phospholipids Of A Prokaryotic Lipoxygenase From Pseudomonas Aeruginosa.
Faseb J. V. 27 4811 2013
PubMed-ID: 23985801  |  Reference-DOI: 10.1096/FJ.13-235952

(-) Compounds

Molecule 1 - 15S-LIPOXYGENASE
    Chains: A
    EC Number: 1.13.11.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: SECRETABLE PA_LOX WITHOUT THE PERIPLASMIC SIGNAL PEPTIDE
    Gene: LOX
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: LINOLEATE LIPOXYGENASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric Unit (3, 7)
No.NameCountTypeFull Name
1FE21Ligand/IonFE (II) ION
2GOL5Ligand/IonGLYCEROL
3ZPE1Ligand/Ion(2R)-3-{[(S)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-2-(TETRADEC-5-ENOYLOXY)PROPYL (11Z)-OCTADEC-11-ENOATE
Biological Unit 1 (3, 7)
No.NameCountTypeFull Name
1FE21Ligand/IonFE (II) ION
2GOL5Ligand/IonGLYCEROL
3ZPE1Ligand/Ion(2R)-3-{[(S)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-2-(TETRADEC-5-ENOYLOXY)PROPYL (11Z)-OCTADEC-11-ENOATE
Biological Unit 2 (3, 14)
No.NameCountTypeFull Name
1FE22Ligand/IonFE (II) ION
2GOL10Ligand/IonGLYCEROL
3ZPE2Ligand/Ion(2R)-3-{[(S)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-2-(TETRADEC-5-ENOYLOXY)PROPYL (11Z)-OCTADEC-11-ENOATE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:377 , HIS A:382 , HIS A:555 , ASN A:559 , ILE A:685 , HOH A:801BINDING SITE FOR RESIDUE FE2 A 701
2AC2SOFTWARESER A:22 , ILE A:23 , TRP A:105 , ILE A:113 , LEU A:182 , VAL A:185 , ASP A:190 , GLU A:373 , HIS A:377 , HIS A:382 , PHE A:415 , ILE A:416 , GLY A:419 , ALA A:420 , ASN A:607 , TYR A:609 , ILE A:685BINDING SITE FOR RESIDUE ZPE A 702
3AC3SOFTWAREGLN A:56 , TYR A:57 , ASP A:58 , LYS A:302 , ASP A:432 , PRO A:438 , ILE A:439 , GLN A:440BINDING SITE FOR RESIDUE GOL A 703
4AC4SOFTWAREGLU A:99 , CYS A:389 , GLN A:393 , ALA A:407 , PHE A:410 , GLU A:411 , HOH A:1016BINDING SITE FOR RESIDUE GOL A 704
5AC5SOFTWARELYS A:87 , ALA A:444 , GLY A:447 , GLY A:448BINDING SITE FOR RESIDUE GOL A 705
6AC6SOFTWAREPHE A:216 , ARG A:220 , PRO A:563 , THR A:567 , HIS A:610 , HOH A:1041BINDING SITE FOR RESIDUE GOL A 706
7AC7SOFTWAREALA A:299 , ASP A:301 , ARG A:637BINDING SITE FOR RESIDUE GOL A 707

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G33)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asn A:20 -Asp A:21
2Phe A:628 -Pro A:629

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G33)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G33)

(-) Exons   (0, 0)

(no "Exon" information available for 4G33)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:661
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh.....hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.ee..........ee...hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhh.......hhhhhh.hhhhhhhhhhhh......ee..........hhhhhhhhhh...hhhhhhhh..eeeee.hhhhhhh....eee...eee.....eeeeee......eeeeeee.........eee........hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhhhhhhh.....hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh...............hhhhhhh...hhhhhhhhhhhhhhhh......................hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g33 A  19 ANDSIFFSPLKYLGAEQQRSIDASRSLLDNLIPPSLPQYDNLAGKLARRAVLTSKKLVYVWTENFANVKGVPMARSVPLGELPNVDWLLKTAGVIVELIVNFVASLPASAAAQFERIAAGLSGDLEAARQVHEALLEEAKNDPAAAGSLLLRFTELQTRVIALLTRVGLLVDDILKSASNLVDGLNRFRAVFGTLRLPEVADSFRDDEAFAYWRVAGPNPLLIRRVDALPANFPLGEEQFRRVMGADDSLLEAAASRRLYLLDYAELGKLAPSGAVDKLLTGTGFAYAPIALFALGKDRAGLLPVAIQCGQDPATHPMFVRPAESESDLYWGWQMAKTVVQVAEENYHEMFVHLAQTHLVSEAFCLATQRTLAPSHPLHVLLAPHFEGTLFINEGAARILLPSAGFIDVMFAAPIQDTQATAGGNRLGFDFYRGMLPESLKARNVDDPAALPDYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEVIGSGKVAGFRPITGRSQLVEVLTMVIFTASAQHAAVNFPQPSMMTYAPAICAMSAAPAPDSPSGKSEADWLKMMPPTLVALEKVNIYHLLGSVYHGRLGDYRQTGFPYAPVFSDRRVTASGGPLERFQARLKEVEATIRTRNQARRKPYEYLLPSRIPASTNI 685
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198 ||    214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684 
                                                                                                                                                                                                               200|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
                                                                                                                                                                                                                207
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G33)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G33)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G33)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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  4g33
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  1.13.11.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LOX_PSEAI | Q8RNT4: 4g32 4rpe 5lc8

(-) Related Entries Specified in the PDB File

4g32