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(-) Description

Title :  CRYSTAL STRUCTURE OF SPECIFIC MUTANT FROM PSEUDOMONAS AERUGINOSA LIPOXYGENASE AT 1.8A RESOLUTION
 
Authors :  J. Kalms, S. Banthiya, E. Galemou Yoga, H. Kuhn, P. Scheerer
Date :  20 Jun 16  (Deposition) - 25 Jan 17  (Release) - 22 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Non-Heme Iron Enzyme, Protein-Phospholipid Complex, Oxidoreductase, A420G Mutant, Eicosanoids, Infectious Diseases, Arachidonate 15S- Lipoxygenase, Linoleate 13S-Lipoxygenase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Kalms, S. Banthiya, E. Galemou Yoga, M. Hamberg, H. G. Holzhutter, H. Kuhn, P. Scheerer
The Crystal Structure Of Pseudomonas Aeruginosa Lipoxygenas Ala420Gly Mutant Explains The Improved Oxygen Affinity And The Altered Reaction Specificity.
Biochim. Biophys. Acta V. 1862 463 2017
PubMed-ID: 28093240  |  Reference-DOI: 10.1016/J.BBALIP.2017.01.003

(-) Compounds

Molecule 1 - ARACHIDONATE 15-LIPOXYGENASE
    Chains: A
    EC Number: 1.13.11.12, 1.13.11.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HMPREF1223_10352
    Mutation: YES
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: LINOLEATE 13-LIPOXYGENASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 6)

Asymmetric/Biological Unit (5, 6)
No.NameCountTypeFull Name
1FE21Ligand/IonFE (II) ION
2GOL1Ligand/IonGLYCEROL
3MG1Ligand/IonMAGNESIUM ION
4PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
5ZPE1Ligand/Ion(2R)-3-{[(S)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-2-(TETRADEC-5-ENOYLOXY)PROPYL (11Z)-OCTADEC-11-ENOATE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:377 , HIS A:382 , HIS A:555 , ASN A:559 , ILE A:685 , HOH A:810binding site for residue FE2 A 701
2AC2SOFTWAREGLN A:56 , TYR A:57 , ASP A:58 , ASN A:59 , ASP A:432 , PRO A:438 , ILE A:439 , GLN A:440 , HOH A:844 , HOH A:856binding site for residue GOL A 702
3AC3SOFTWARESER A:22 , ILE A:23 , TRP A:105 , LEU A:182 , VAL A:185 , ASP A:190 , GLU A:373 , HIS A:377 , HIS A:382 , PHE A:415 , ILE A:416 , GLY A:420 , LEU A:424 , ILE A:685 , HOH A:900binding site for residue ZPE A 703
4AC4SOFTWARELYS A:654binding site for residue PEG A 704
5AC5SOFTWARELYS A:302 , LEU A:303 , GLY A:306binding site for residue PEG A 705
6AC6SOFTWAREHIS A:340 , HOH A:825 , HOH A:831 , HOH A:1072 , HOH A:1093 , HOH A:1124binding site for residue MG A 706

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LC8)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:628 -Pro A:629

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LC8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LC8)

(-) Exons   (0, 0)

(no "Exon" information available for 5LC8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:656
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh.hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.ee..........ee...hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh.......hhhhhh.hhhhhhhhhhhh......ee..........hhhhhhhhhh...hhhhhhhh..eeeee.hhhhhhh....eee...eee.....eeeeee......eeeeeee.........eee.....hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhhhhhhh.....hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhh...hhhhhhhhhhhhhhhh......................hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lc8 A  22 SIFFSPLKYLGAEQQRSIDASRSLLDNLIPPSLPQYDNLAGKLARRAVLTSKKLVYVWTENFANVKGVPMARSVPLGELPNVDWLLKTAGVIVELIVNFVASLPASAAAQFERIAAGLSGDLEAARQVHEALLEEAKNDPAAAGSLLLRFTELQTRVIALLTRVGLLVDDILKSASNLGLNRFRAVFGTLRLPEVADSFRDDEAFAYWRVAGPNPLLIRRVDALPANFPLGEEQFRRVMGADDSLLEAAASRRLYLLDYAELGKLAPSGAVDKLLTGTGFAYAPIALFALGKDRAGLLPVAIQCGQDPATHPMFVRPAESESDLYWGWQMAKTVVQVAEENYHEMFVHLAQTHLVSEAFCLATQRTLAPSHPLHVLLAPHFEGTLFINEGGARILLPSAGFIDVMFAAPIQDTQATAGGNRLGFDFYRGMLPESLKARNVDDPAALPDYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEVIGSGKVAGFRPITGRSQLVEVLTMVIFTASAQHAAVNFPQPSMMTYAPAICAMSAAPAPDSPSGKSEADWLKMMPPTLVALEKVNIYHLLGSVYHGRLGDYRQTGFPYAPVFSDRRVTASGGPLERFQARLKEVEATIRTRNQARRKPYEYLLPSRIPASTNI 685
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679      
                                                                                                                                                                                                           199|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
                                                                                                                                                                                                            208
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LC8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LC8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LC8)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Phe A:628 - Pro A:629   [ RasMol ]  
 

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        LOX_PSEAI | Q8RNT4: 4g32 4g33 4rpe

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