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(-) Description

Title :  CRYSTAL STRUCTURE OF A PHOSPHOLIPID-LIPOXYGENASE COMPLEX FROM PSEUDOMONAS AERUGINOSA AT 1.75A (P21212)
 
Authors :  X. Carpena, A. Garreta, S. P. Val-Moraes, Q. Garcia-Fernandez, I. Fita
Date :  13 Jul 12  (Deposition) - 06 Nov 13  (Release) - 25 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Non-Heme Iron Enzyme, Protein-Phospholipid Complex, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Garreta, S. P. Val-Moraes, Q. Garcia-Fernandez, M. Busquets, C. Juan, A. Oliver, A. Ortiz, B. J. Gaffney, I. Fita, A. Manresa, X. Carpena
Structure And Interaction With Phospholipids Of A Prokaryotic Lipoxygenase From Pseudomonas Aeruginosa.
Faseb J. V. 27 4811 2013
PubMed-ID: 23985801  |  Reference-DOI: 10.1096/FJ.13-235952

(-) Compounds

Molecule 1 - 15S-LIPOXYGENASE
    Chains: A
    EC Number: 1.13.11.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: SECRETABLE PA_LOX WITHOUT THE PERIPLASMIC SIGNAL PEPTIDE
    Gene: LOX
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: LINOLEATE LIPOXYGENASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric/Biological Unit (3, 15)
No.NameCountTypeFull Name
1FE21Ligand/IonFE (II) ION
2GOL13Ligand/IonGLYCEROL
3ZPE1Ligand/Ion(2R)-3-{[(S)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-2-(TETRADEC-5-ENOYLOXY)PROPYL (11Z)-OCTADEC-11-ENOATE

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:377 , HIS A:382 , HIS A:555 , ASN A:559 , ILE A:685 , HOH A:801BINDING SITE FOR RESIDUE FE2 A 701
02AC2SOFTWARELEU A:182 , VAL A:185 , GLY A:186 , ASP A:190 , LEU A:193 , GLU A:373 , HIS A:382 , PHE A:415 , ILE A:416 , ALA A:420 , ARG A:422 , ILE A:423 , LEU A:424 , TYR A:609 , ILE A:685 , HOH A:846 , HOH A:852 , HOH A:853 , HOH A:1195 , HOH A:1244BINDING SITE FOR RESIDUE ZPE A 702
03AC3SOFTWAREGLU A:99 , CYS A:389 , GLN A:393 , ALA A:407 , PHE A:410 , GLU A:411BINDING SITE FOR RESIDUE GOL A 703
04AC4SOFTWAREARG A:248 , ASP A:287 , HOH A:836 , HOH A:1121 , HOH A:1359BINDING SITE FOR RESIDUE GOL A 704
05AC5SOFTWARELYS A:527 , ARG A:619 , ARG A:678 , HOH A:1382 , HOH A:1404 , HOH A:1451BINDING SITE FOR RESIDUE GOL A 705
06AC6SOFTWAREARG A:229 , ASP A:231 , ARG A:345 , PRO A:346 , TYR A:354 , TRP A:357 , GLN A:358 , LYS A:361 , HOH A:954 , HOH A:1426BINDING SITE FOR RESIDUE GOL A 706
07AC7SOFTWAREALA A:658 , THR A:659 , THR A:662 , HOH A:1352BINDING SITE FOR RESIDUE GOL A 707
08AC8SOFTWAREGLN A:493 , ALA A:496 , ASP A:497 , ALA A:500 , HOH A:1027 , HOH A:1065 , HOH A:1145BINDING SITE FOR RESIDUE GOL A 708
09AC9SOFTWARETYR A:456 , GLU A:542 , HOH A:1044 , HOH A:1395 , HOH A:1425 , HOH A:1441BINDING SITE FOR RESIDUE GOL A 709
10BC1SOFTWAREASP A:582 , SER A:583 , HOH A:1293BINDING SITE FOR RESIDUE GOL A 710
11BC2SOFTWAREGLY A:530 , PHE A:531 , ARG A:532 , ALA A:658 , ARG A:661 , THR A:662 , GLN A:665 , HOH A:873 , HOH A:1043BINDING SITE FOR RESIDUE GOL A 711
12BC3SOFTWAREARG A:220 , PRO A:222 , PRO A:563 , HIS A:610 , HOH A:911 , HOH A:1218BINDING SITE FOR RESIDUE GOL A 712
13BC4SOFTWAREGLU A:262 , ARG A:266 , VAL A:501 , TYR A:502 , ARG A:638 , HOH A:938 , HOH A:1150BINDING SITE FOR RESIDUE GOL A 713
14BC5SOFTWARELYS A:87 , GLY A:88 , ALA A:444 , GLY A:447 , GLY A:448 , LEU A:451 , HOH A:1423BINDING SITE FOR RESIDUE GOL A 714
15BC6SOFTWAREASP A:506 , THR A:535 , GLY A:536 , GLN A:539 , HOH A:1449BINDING SITE FOR RESIDUE GOL A 715

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G32)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:628 -Pro A:629

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G32)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G32)

(-) Exons   (0, 0)

(no "Exon" information available for 4G32)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:630
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh.ee..........ee...hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.......hhhhhh.hhhhhhhhhhhh......ee..........hhhhhhhhhh...hhhhhhhh..eeeee.hhhhhhh....eee...eee.....eeeeee......eeeeeee.........eee.....hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhhhhhhh.....hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhh...hhhhhhhhhhhhhhhh......................hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4g32 A  50 IPPSLPQYDNLAGKLARRAVLTSKKLVYVWTENFANVKGVPMARSVPLGELPNVDWLLKTAGVIVELIVNFVASLPASAAAQFERIAAGLSGDLEAARQVHEALLEEAKNDPAAAGSLLLRFTELQTRVIALLTRVGLLVDDILKSASNLVDGLNRFRAVFGTLRLPEVADSFRDDEAFAYWRVAGPNPLLIRRVDALPANFPLGEEQFRRVMGADDSLLEAAASRRLYLLDYAELGKLAPSGAVDKLLTGTGFAYAPIALFALGKDRAGLLPVAIQCGQDPATHPMFVRPAESESDLYWGWQMAKTVVQVAEENYHEMFVHLAQTHLVSEAFCLATQRTLAPSHPLHVLLAPHFEGTLFINEGAARILLPSAGFIDVMFAAPIQDTQATAGGNRLGFDFYRGMLPESLKARNVDDPAALPDYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEVIGSGKVAGFRPITGRSQLVEVLTMVIFTASAQHAAVNFPQPSMMTYAPAICAMSAAPAPDSPSGKSEADWLKMMPPTLVALEKVNIYHLLGSVYHGRLGDYRQTGFPYAPVFSDRRVTASGGPLERFQARLKEVEATIRTRNQARRKPYEYLLPSRIPASTNI 685
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199||     215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685
                                                                                                                                                                                200|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
                                                                                                                                                                                 207
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G32)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G32)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G32)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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    Phe A:628 - Pro A:629   [ RasMol ]  
 

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 Related Entries

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        LOX_PSEAI | Q8RNT4: 4g33 4rpe 5lc8

(-) Related Entries Specified in the PDB File

4g33