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(-) Description

Title :  HUMAN COLLAGENASE 3 (MMP-13) FULL FORM WITH PEPTIDES FROM PRO-DOMAIN
 
Authors :  E. A. Stura, L. Vera, R. Visse, H. Nagase, V. Dive
Date :  09 Jul 12  (Deposition) - 21 Aug 13  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.54
Chains :  Asym. Unit :  A,B,C,D,W,X,Y,Z
Biol. Unit 1:  A,W  (1x)
Biol. Unit 2:  B,X  (1x)
Biol. Unit 3:  C,Y  (1x)
Biol. Unit 4:  D,Z  (1x)
Keywords :  Protein-Peptide Complex, Collagenase, Cleavage With Mmp3, Hydrolase, Pro-Peptide, Metzincin, Zinc Metalloprotease, Collagen Cleavage, Collagen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. A. Stura, R. Visse, P. Cuniasse, V. Dive, H. Nagase
Crystal Structure Of Full-Length Human Collagenase 3 (Mmp-13) With Peptides In The Active Site Defines Exosites In The Catalytic Domain.
Faseb J. V. 27 4395 2013
PubMed-ID: 23913860  |  Reference-DOI: 10.1096/FJ.13-233601

(-) Compounds

Molecule 1 - COLLAGENASE 3
    Chains: A, B, C, D
    EC Number: 3.4.24.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: INACTIVE FULL FORM (UNP RESIDUES 104-471)
    Gene: MMP13
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MATRIX METALLOPROTEINASE-13, MMP-13
 
Molecule 2 - COLLAGENASE 3, PRO-DOMAIN PEPTIDE
    Chains: W, X, Y, Z
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: PRO-DOMAIN FRAGMENT (UNP RESIDUES 25-50)
    Gene: MMP13
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MATRIX METALLOPROTEINASE-13, MMP-13

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDWXYZ
Biological Unit 1 (1x): A   W   
Biological Unit 2 (1x):  B   X  
Biological Unit 3 (1x):   C   Y 
Biological Unit 4 (1x):    D   Z

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 86)

Asymmetric Unit (6, 86)
No.NameCountTypeFull Name
1CA23Ligand/IonCALCIUM ION
2CL8Ligand/IonCHLORIDE ION
3GOL5Ligand/IonGLYCEROL
4PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
5PGO38Ligand/IonS-1,2-PROPANEDIOL
6ZN8Ligand/IonZINC ION
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3GOL-1Ligand/IonGLYCEROL
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5PGO11Ligand/IonS-1,2-PROPANEDIOL
6ZN-1Ligand/IonZINC ION
Biological Unit 2 (3, 10)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3GOL2Ligand/IonGLYCEROL
4PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
5PGO5Ligand/IonS-1,2-PROPANEDIOL
6ZN-1Ligand/IonZINC ION
Biological Unit 3 (2, 14)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3GOL3Ligand/IonGLYCEROL
4PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
5PGO11Ligand/IonS-1,2-PROPANEDIOL
6ZN-1Ligand/IonZINC ION
Biological Unit 4 (1, 11)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3GOL-1Ligand/IonGLYCEROL
4PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
5PGO11Ligand/IonS-1,2-PROPANEDIOL
6ZN-1Ligand/IonZINC ION

(-) Sites  (86, 86)

Asymmetric Unit (86, 86)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:222 , HIS A:226 , HIS A:232 , SER W:45 , HOH W:101BINDING SITE FOR RESIDUE ZN A 501
02AC2SOFTWAREHIS A:172 , ASP A:174 , HIS A:187 , HIS A:200BINDING SITE FOR RESIDUE ZN A 502
03AC3SOFTWAREASP A:128 , ASP A:203 , GLU A:205BINDING SITE FOR RESIDUE CA A 503
04AC4SOFTWAREASP A:179 , GLY A:180 , SER A:182 , LEU A:184 , ASP A:202 , GLU A:205BINDING SITE FOR RESIDUE CA A 504
05AC5SOFTWAREASP A:162 , ASN A:194 , GLY A:196 , ASP A:198 , HOH A:750BINDING SITE FOR RESIDUE CA A 505
06AC6SOFTWAREASP A:291 , ASP A:335 , SER A:383 , ASP A:432 , HOH A:625 , HOH A:680 , HOH A:820BINDING SITE FOR RESIDUE CA A 506
07AC7SOFTWAREILE A:293 , ALA A:337 , ALA A:385 , VAL A:434 , CL A:508 , HOH A:746BINDING SITE FOR RESIDUE CA A 507
08AC8SOFTWAREILE A:293 , ALA A:337 , ALA A:385 , VAL A:434 , CA A:507BINDING SITE FOR RESIDUE CL A 508
09AC9SOFTWAREASP A:390 , HOH A:819BINDING SITE FOR RESIDUE PGO A 509
10BC1SOFTWAREASP A:390 , THR A:391 , THR A:408BINDING SITE FOR RESIDUE PGO A 510
11BC2SOFTWARELYS A:170 , TRP C:455BINDING SITE FOR RESIDUE PGO A 511
12BC3SOFTWARETYR A:440 , SER A:453 , TRP A:455 , SER A:456 , VAL A:460BINDING SITE FOR RESIDUE PGO A 512
13BC4SOFTWAREMET A:253 , ARG A:306 , PGO A:514 , HOH A:817BINDING SITE FOR RESIDUE PGO A 513
14BC5SOFTWAREGLY A:237 , THR A:247 , PHE A:252 , PRO A:255 , ARG A:306 , LEU A:322 , PGO A:513 , HOH A:673 , HOH A:717BINDING SITE FOR RESIDUE PGO A 514
15BC6SOFTWAREGLY A:439 , TRP A:455BINDING SITE FOR RESIDUE PGO A 515
16BC7SOFTWARESER A:467 , HOH A:691BINDING SITE FOR RESIDUE PGO A 516
17BC8SOFTWAREPRO A:281 , ASP A:282 , LEU A:288 , HOH A:757BINDING SITE FOR RESIDUE PGO A 517
18BC9SOFTWAREASN A:215 , TYR A:246 , GLY A:248 , LYS A:249 , SER A:250BINDING SITE FOR RESIDUE PGO A 518
19CC1SOFTWAREGLN A:401 , PRO A:417BINDING SITE FOR RESIDUE PGO A 519
20CC2SOFTWARETYR A:104BINDING SITE FOR RESIDUE PEG A 520
21CC3SOFTWAREHIS B:222 , HIS B:226 , HIS B:232 , SER X:45 , HOH X:107BINDING SITE FOR RESIDUE ZN B 501
22CC4SOFTWAREHIS B:172 , ASP B:174 , HIS B:187 , HIS B:200BINDING SITE FOR RESIDUE ZN B 502
23CC5SOFTWAREASP B:128 , ASP B:203 , GLU B:205 , HOH B:653BINDING SITE FOR RESIDUE CA B 503
24CC6SOFTWAREASP B:179 , GLY B:180 , SER B:182 , LEU B:184 , ASP B:202 , GLU B:205BINDING SITE FOR RESIDUE CA B 504
25CC7SOFTWAREASP B:162 , ASN B:194 , GLY B:196 , ASP B:198 , HOH B:643 , HOH B:720BINDING SITE FOR RESIDUE CA B 505
26CC8SOFTWAREASP B:291 , ASP B:335 , SER B:383 , ASP B:432 , HOH B:605 , HOH B:675 , HOH B:801BINDING SITE FOR RESIDUE CA B 506
27CC9SOFTWAREILE B:293 , ALA B:337 , ALA B:385 , VAL B:434 , CL B:508 , CL B:510BINDING SITE FOR RESIDUE CA B 507
28DC1SOFTWAREILE B:293 , ALA B:337 , ALA B:385 , VAL B:434 , CA B:507BINDING SITE FOR RESIDUE CL B 508
29DC2SOFTWARESER B:146 , THR B:149 , GLY B:269 , HOH B:711BINDING SITE FOR RESIDUE CA B 509
30DC3SOFTWAREILE B:293 , THR B:294 , TYR B:338 , CA B:507 , HOH B:641 , HOH B:736BINDING SITE FOR RESIDUE CL B 510
31DC4SOFTWAREVAL B:106 , PHE B:107 , ARG B:109BINDING SITE FOR RESIDUE PEG B 511
32DC5SOFTWAREPRO B:278 , HOH B:633BINDING SITE FOR RESIDUE GOL B 512
33DC6SOFTWARETYR B:125 , THR B:126 , PHE B:167 , ILE B:169 , ASP B:203 , HOH B:670BINDING SITE FOR RESIDUE PEG B 513
34DC7SOFTWAREASN B:124 , TYR B:125 , HIS B:131 , TRP C:455BINDING SITE FOR RESIDUE PEG B 514
35DC8SOFTWAREGLU B:421 , PHE B:424 , GLY B:426 , GLY B:428BINDING SITE FOR RESIDUE PGO B 515
36DC9SOFTWARELYS B:283 , CYS B:284 , LEU B:469 , TRP B:470BINDING SITE FOR RESIDUE GOL B 516
37EC1SOFTWARELYS B:140 , PHE B:217 , TYR B:246 , GLY B:248 , LYS B:249 , SER B:250 , HOH B:743BINDING SITE FOR RESIDUE PGO B 517
38EC2SOFTWAREHIS B:232BINDING SITE FOR RESIDUE PGO B 518
39EC3SOFTWAREASN B:445 , ILE B:448BINDING SITE FOR RESIDUE PGO B 519
40EC4SOFTWAREGLN B:314BINDING SITE FOR RESIDUE PGO B 520
41EC5SOFTWAREHIS C:222 , HIS C:226 , HIS C:232 , SER Y:45 , CL Y:101BINDING SITE FOR RESIDUE ZN C 501
42EC6SOFTWAREHIS C:172 , ASP C:174 , HIS C:187 , HIS C:200BINDING SITE FOR RESIDUE ZN C 502
43EC7SOFTWAREASP C:128 , ASP C:203 , GLU C:205BINDING SITE FOR RESIDUE CA C 503
44EC8SOFTWAREASP C:179 , GLY C:180 , SER C:182 , LEU C:184 , ASP C:202 , GLU C:205BINDING SITE FOR RESIDUE CA C 504
45EC9SOFTWAREASP C:162 , ASN C:194 , GLY C:196 , ASP C:198 , HOH C:630 , HOH C:768BINDING SITE FOR RESIDUE CA C 505
46FC1SOFTWAREASP C:291 , ASP C:335 , SER C:383 , ASP C:432 , HOH C:621 , HOH C:656 , HOH C:709BINDING SITE FOR RESIDUE CA C 506
47FC2SOFTWAREILE C:293 , ALA C:337 , ALA C:385 , VAL C:434 , CL C:508BINDING SITE FOR RESIDUE CA C 507
48FC3SOFTWAREALA C:292 , ILE C:293 , ALA C:337 , ALA C:385 , CA C:507BINDING SITE FOR RESIDUE CL C 508
49FC4SOFTWARESER C:146 , THR C:149 , HOH C:659 , HOH C:660BINDING SITE FOR RESIDUE CA C 509
50FC5SOFTWAREILE C:243 , THR C:245 , HOH C:611 , HOH C:634BINDING SITE FOR RESIDUE CA C 510
51FC6SOFTWAREMET C:253 , PRO C:278 , ARG C:306 , ARG C:333 , PGO C:519 , HOH C:636BINDING SITE FOR RESIDUE PGO C 511
52FC7SOFTWAREGLU A:319 , HOH A:643 , ASP C:317 , ALA C:318BINDING SITE FOR RESIDUE GOL C 512
53FC8SOFTWAREGLU C:171BINDING SITE FOR RESIDUE GOL C 513
54FC9SOFTWARETHR C:300 , LEU C:311 , HIS C:312 , PRO C:313 , GLN C:315 , TRP C:470 , PGO C:515BINDING SITE FOR RESIDUE PGO C 514
55GC1SOFTWARESER C:467 , ILE C:468 , PGO C:514BINDING SITE FOR RESIDUE PGO C 515
56GC2SOFTWAREGLN A:314 , SER C:325 , TYR C:360 , HOH C:692 , HOH C:722 , HOH C:782BINDING SITE FOR RESIDUE PGO C 516
57GC3SOFTWAREASN C:194 , ASP C:198BINDING SITE FOR RESIDUE PGO C 517
58GC4SOFTWAREPRO B:127 , TRP C:455BINDING SITE FOR RESIDUE PGO C 518
59GC5SOFTWAREPHE C:252 , MET C:253 , ARG C:306 , PGO C:511 , PGO C:520BINDING SITE FOR RESIDUE PGO C 519
60GC6SOFTWARETHR C:247 , PHE C:252 , PRO C:255 , ARG C:306 , LEU C:322 , PGO C:519 , HOH C:776BINDING SITE FOR RESIDUE PGO C 520
61GC7SOFTWAREASP C:282 , ASP C:285 , LEU C:288 , HOH C:637BINDING SITE FOR RESIDUE PGO C 521
62GC8SOFTWAREPRO C:417 , LEU C:419BINDING SITE FOR RESIDUE GOL C 522
63GC9SOFTWAREGLN C:263 , LEU C:265BINDING SITE FOR RESIDUE PGO C 523
64HC1SOFTWARELYS C:140 , THR C:247 , GLY C:248 , SER C:250 , HOH C:740BINDING SITE FOR RESIDUE PGO C 524
65HC2SOFTWAREHIS D:222 , HIS D:226 , HIS D:232 , SER Z:45 , CL Z:101BINDING SITE FOR RESIDUE ZN D 501
66HC3SOFTWAREHIS D:172 , ASP D:174 , HIS D:187 , HIS D:200BINDING SITE FOR RESIDUE ZN D 502
67HC4SOFTWAREASP D:179 , GLY D:180 , SER D:182 , LEU D:184 , ASP D:202 , GLU D:205BINDING SITE FOR RESIDUE CA D 503
68HC5SOFTWAREASP D:128 , ASP D:203 , GLU D:205 , HOH D:720BINDING SITE FOR RESIDUE CA D 504
69HC6SOFTWAREASP D:162 , ASN D:194 , GLY D:196 , ASP D:198 , HOH D:684 , HOH D:781BINDING SITE FOR RESIDUE CA D 505
70HC7SOFTWAREASP D:291 , ASP D:335 , SER D:383 , ASP D:432 , HOH D:621 , HOH D:632 , HOH D:718BINDING SITE FOR RESIDUE CA D 506
71HC8SOFTWAREILE D:293 , ALA D:337 , ALA D:385 , VAL D:434 , CL D:508 , CL D:509BINDING SITE FOR RESIDUE CA D 507
72HC9SOFTWARETHR D:294 , CA D:507 , HOH D:676BINDING SITE FOR RESIDUE CL D 508
73IC1SOFTWAREILE D:293 , ALA D:337 , ALA D:385 , ALA D:433 , VAL D:434 , CA D:507BINDING SITE FOR RESIDUE CL D 509
74IC2SOFTWARESER D:146 , THR D:149 , PRO D:150 , LEU D:151 , ASP D:270BINDING SITE FOR RESIDUE PGO D 510
75IC3SOFTWAREPHE D:252 , MET D:253 , ARG D:306 , ASN D:332BINDING SITE FOR RESIDUE PGO D 511
76IC4SOFTWAREASN D:194 , ASP D:198BINDING SITE FOR RESIDUE PGO D 512
77IC5SOFTWAREARG D:297 , PHE D:326 , GLY D:359 , TYR D:360BINDING SITE FOR RESIDUE PGO D 513
78IC6SOFTWAREASP D:256 , PRO D:275 , HIS D:277 , HOH D:686BINDING SITE FOR RESIDUE PGO D 514
79IC7SOFTWAREILE C:459 , GLU D:421 , GLY D:426 , ILE D:427 , GLY D:428 , HOH D:640BINDING SITE FOR RESIDUE PGO D 515
80IC8SOFTWAREASP D:285 , SER D:287 , LEU D:288 , SER D:289 , LYS D:304 , HOH D:780BINDING SITE FOR RESIDUE PGO D 516
81IC9SOFTWAREPRO C:464 , HOH C:775 , ASN D:445 , ILE D:448BINDING SITE FOR RESIDUE PGO D 517
82JC1SOFTWARETYR D:435 , LYS D:437 , GLN D:449 , ILE D:468BINDING SITE FOR RESIDUE PGO D 518
83JC2SOFTWARELYS D:140 , ASN D:215 , TYR D:246 , GLY D:248 , LYS D:249BINDING SITE FOR RESIDUE PGO D 519
84JC3SOFTWARETHR D:110 , LYS D:112 , PRO D:191 , GLY D:192 , HOH D:736BINDING SITE FOR RESIDUE PGO D 520
85JC4SOFTWAREHIS C:222 , HIS C:226 , ZN C:501 , HOH C:715 , ARG Y:44 , SER Y:45 , TYR Y:46BINDING SITE FOR RESIDUE CL Y 101
86JC5SOFTWAREHIS D:222 , HIS D:226 , ZN D:501 , HOH D:714 , ARG Z:44 , SER Z:45 , TYR Z:46BINDING SITE FOR RESIDUE CL Z 101

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:284 -A:471
2B:284 -B:471
3C:284 -C:471
4D:284 -D:471

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Tyr A:366 -Pro A:367
2Tyr A:416 -Pro A:417
3Tyr B:366 -Pro B:367
4Tyr B:416 -Pro B:417
5Tyr C:366 -Pro C:367
6Tyr C:416 -Pro C:417
7Tyr D:366 -Pro D:367
8Tyr D:416 -Pro D:417

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G0D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G0D)

(-) Exons   (0, 0)

(no "Exon" information available for 4G0D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:368
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee..............eeeeee..........eeee....ee.....eehhhhhhhhhhhhh..........................hhhhhhhhhhhhh........................eeeee..eeeeee..eeeee.......eeee.hhh.........eeeee....eeeeee..eeeeee..ee.....ee..............eeee.....eeeeee..eeeeee....ee.....eehhhhh........eeeee..eeeeee..eeeeee....eeeeeee.hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g0d A 104 YNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHAFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYGPGDEDPNPKHPKTPDKCDPSLSLDAITSLRGETMIFKDRFFWRLHPQQVDAELFLTKSFWPELPNRIDAAYEHPSHDLIFIFRGRKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGNQVWRYDDTNHIMDKDYPRLIEEDFPGIGDKVDAVYEKNGYIYFFNGPIQFEYSIWSNRIVRVMPANSILWC 471
                                   113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463        


Chain B from PDB  Type:PROTEIN  Length:368
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee.......hhhhhhhhhhhhhhhhhh....eeeee......eeeeee..............eeeeee..........eeee....ee.....eehhhhhhhhhhhhhh.........................hhhhhhhhhhhhh........................eeeee..eeeeee..eeeee.......eeee.hhh.........eeeeehhhheeeeee..eeeeee..ee.....ee.hhhh.........eeee.....eeeeee..eeeeee....ee.....eehhhhh........eeeee..eeeeee..eeeeee....eeeeeee.hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g0d B 104 YNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHAFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYGPGDEDPNPKHPKTPDKCDPSLSLDAITSLRGETMIFKDRFFWRLHPQQVDAELFLTKSFWPELPNRIDAAYEHPSHDLIFIFRGRKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGNQVWRYDDTNHIMDKDYPRLIEEDFPGIGDKVDAVYEKNGYIYFFNGPIQFEYSIWSNRIVRVMPANSILWC 471
                                   113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463        


Chain C from PDB  Type:PROTEIN  Length:368
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..........eeeeee.......hhhhhhhhhhhhhhhhhh....eeee.......eeeeee..............eeeeee..........eeee....ee.....eehhhhhhhhhhhhh.ee.......................hhhhhhhhhhhhh........................eeeee..eeeeee..eeeee.......eeeehhhhh........eeeeehhhheeeeee..eeeeee..ee.....ee.hhhh.........eeeee....eeeeee..eeeeee....ee.....eehhhhh........eeeee..eeeeee..eeeeee.....eeeeee.hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g0d C 104 YNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHAFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYGPGDEDPNPKHPKTPDKCDPSLSLDAITSLRGETMIFKDRFFWRLHPQQVDAELFLTKSFWPELPNRIDAAYEHPSHDLIFIFRGRKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGNQVWRYDDTNHIMDKDYPRLIEEDFPGIGDKVDAVYEKNGYIYFFNGPIQFEYSIWSNRIVRVMPANSILWC 471
                                   113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463        


Chain D from PDB  Type:PROTEIN  Length:368
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..........eeeeee.......hhhhhhhhhhhhhhhhhh....eeeee......eeeeee..............eeeeee..........eeee....ee.....eehhhhhhhhhhhhh.ee.......................hhhhhhhhhhhhh........................eeeee..eeeeee..eeeee.......eeee.hhh.........eeeeehhhheeeeee..eeeeee..ee.....ee.hhhh.........eeeee....eeeeee..eeeeee....ee.....eehhhhh........eeeee..eeeeee..eeeeee....eeeeeee.hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g0d D 104 YNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHAFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYGPGDEDPNPKHPKTPDKCDPSLSLDAITSLRGETMIFKDRFFWRLHPQQVDAELFLTKSFWPELPNRIDAAYEHPSHDLIFIFRGRKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGNQVWRYDDTNHIMDKDYPRLIEEDFPGIGDKVDAVYEKNGYIYFFNGPIQFEYSIWSNRIVRVMPANSILWC 471
                                   113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463        


Chain W from PDB  Type:PROTEIN  Length:19
                                                   
               SCOP domains ------------------- SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains ------------------- Pfam domains
         Sec.struct. author .....hhhhhh.eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                 4g0d W  32 SEEDLQFAERYLRSYYHPT  50
                                    41         


Chain X from PDB  Type:PROTEIN  Length:26
                                                          
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhheeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                 4g0d X  25 GGDEDDLSEEDLQFAERYLRSYYHPT  50
                                    34        44      


Chain Y from PDB  Type:PROTEIN  Length:23
                                                       
               SCOP domains ----------------------- SCOP domains
               CATH domains ----------------------- CATH domains
               Pfam domains ----------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhh.eeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------- SAPs(SNPs)
                    PROSITE ----------------------- PROSITE
                 Transcript ----------------------- Transcript
                 4g0d Y  28 EDDLSEEDLQFAERYLRSYYHPT  50
                                    37        47   


Chain Z from PDB  Type:PROTEIN  Length:23
                                                       
               SCOP domains ----------------------- SCOP domains
               CATH domains ----------------------- CATH domains
               Pfam domains ----------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhheeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------- SAPs(SNPs)
                    PROSITE ----------------------- PROSITE
                 Transcript ----------------------- Transcript
                 4g0d Z  28 EDDLSEEDLQFAERYLRSYYHPT  50
                                    37        47
   Legend:   → Mismatch (orange background)
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(-) SCOP Domains  (0, 0)

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(no "CATH Domain" information available for 4G0D)

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(-) Gene Ontology  (42, 42)

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 Related Entries

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        MMP13_HUMAN | P45452: 1eub 1fls 1fm1 1pex 1uc1 1xuc 1xud 1xur 1you 1ztq 2d1n 2e2d 2ow9 2ozr 2pjt 2yig 3elm 3i7g 3i7i 3kec 3kej 3kek 3kry 3ljz 3o2x 3tvc 3wv1 3wv2 3wv3 3zxh 456c 4a7b 4fu4 4fvl 4jp4 4jpa 4l19 5b5o 5b5p 5bot 5boy 5bpa 5uwk 5uwl 5uwm 5uwn 830c

(-) Related Entries Specified in the PDB File

1pex COLLAGENASE-3 (MMP-13) C-TERMINAL HEMOPEXIN-LIKE DOMAIN METALLOPROTEASE
3tvc HUMAN MMP13 IN COMPLEX WITH L-GLUTAMATE MOTIF INHIBITOR
4fu4 HUMAN COLLAGENASE 3 (MMP-13) FULL FORM WITH PEPTIDES FROM PRO-DOMAIN
4fvl HUMAN COLLAGENASE 3 (MMP-13) FULL FORM WITH PEPTIDES FROM PRO-DOMAIN