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4G0D
Biol. Unit 4
Info
Asym.Unit (302 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (78 KB)
Biol.Unit 3 (79 KB)
Biol.Unit 4 (79 KB)
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(1)
Title
:
HUMAN COLLAGENASE 3 (MMP-13) FULL FORM WITH PEPTIDES FROM PRO-DOMAIN
Authors
:
E. A. Stura, L. Vera, R. Visse, H. Nagase, V. Dive
Date
:
09 Jul 12 (Deposition) - 21 Aug 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.54
Chains
:
Asym. Unit : A,B,C,D,W,X,Y,Z
Biol. Unit 1: A,W (1x)
Biol. Unit 2: B,X (1x)
Biol. Unit 3: C,Y (1x)
Biol. Unit 4: D,Z (1x)
Keywords
:
Protein-Peptide Complex, Collagenase, Cleavage With Mmp3, Hydrolase, Pro-Peptide, Metzincin, Zinc Metalloprotease, Collagen Cleavage, Collagen
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
E. A. Stura, R. Visse, P. Cuniasse, V. Dive, H. Nagase
Crystal Structure Of Full-Length Human Collagenase 3 (Mmp-13) With Peptides In The Active Site Defines Exosites In The Catalytic Domain.
Faseb J. V. 27 4395 2013
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Hetero Components
(1, 11)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
1q: CALCIUM ION (CAq)
1r: CALCIUM ION (CAr)
1s: CALCIUM ION (CAs)
1t: CALCIUM ION (CAt)
1u: CALCIUM ION (CAu)
1v: CALCIUM ION (CAv)
1w: CALCIUM ION (CAw)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
5a: S-1,2-PROPANEDIOL (PGOa)
5aa: S-1,2-PROPANEDIOL (PGOaa)
5ab: S-1,2-PROPANEDIOL (PGOab)
5ac: S-1,2-PROPANEDIOL (PGOac)
5ad: S-1,2-PROPANEDIOL (PGOad)
5ae: S-1,2-PROPANEDIOL (PGOae)
5af: S-1,2-PROPANEDIOL (PGOaf)
5ag: S-1,2-PROPANEDIOL (PGOag)
5ah: S-1,2-PROPANEDIOL (PGOah)
5ai: S-1,2-PROPANEDIOL (PGOai)
5aj: S-1,2-PROPANEDIOL (PGOaj)
5ak: S-1,2-PROPANEDIOL (PGOak)
5al: S-1,2-PROPANEDIOL (PGOal)
5b: S-1,2-PROPANEDIOL (PGOb)
5c: S-1,2-PROPANEDIOL (PGOc)
5d: S-1,2-PROPANEDIOL (PGOd)
5e: S-1,2-PROPANEDIOL (PGOe)
5f: S-1,2-PROPANEDIOL (PGOf)
5g: S-1,2-PROPANEDIOL (PGOg)
5h: S-1,2-PROPANEDIOL (PGOh)
5i: S-1,2-PROPANEDIOL (PGOi)
5j: S-1,2-PROPANEDIOL (PGOj)
5k: S-1,2-PROPANEDIOL (PGOk)
5l: S-1,2-PROPANEDIOL (PGOl)
5m: S-1,2-PROPANEDIOL (PGOm)
5n: S-1,2-PROPANEDIOL (PGOn)
5o: S-1,2-PROPANEDIOL (PGOo)
5p: S-1,2-PROPANEDIOL (PGOp)
5q: S-1,2-PROPANEDIOL (PGOq)
5r: S-1,2-PROPANEDIOL (PGOr)
5s: S-1,2-PROPANEDIOL (PGOs)
5t: S-1,2-PROPANEDIOL (PGOt)
5u: S-1,2-PROPANEDIOL (PGOu)
5v: S-1,2-PROPANEDIOL (PGOv)
5w: S-1,2-PROPANEDIOL (PGOw)
5x: S-1,2-PROPANEDIOL (PGOx)
5y: S-1,2-PROPANEDIOL (PGOy)
5z: S-1,2-PROPANEDIOL (PGOz)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
GOL
-1
Ligand/Ion
GLYCEROL
4
PEG
-1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PGO
11
Ligand/Ion
S-1,2-PROPANEDIOL
6
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
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Sites
(21, 21)
Info
All Sites
01: HC2 (SOFTWARE)
02: HC3 (SOFTWARE)
03: HC4 (SOFTWARE)
04: HC5 (SOFTWARE)
05: HC6 (SOFTWARE)
06: HC7 (SOFTWARE)
07: HC8 (SOFTWARE)
08: HC9 (SOFTWARE)
09: IC1 (SOFTWARE)
10: IC2 (SOFTWARE)
11: IC3 (SOFTWARE)
12: IC4 (SOFTWARE)
13: IC5 (SOFTWARE)
14: IC6 (SOFTWARE)
15: IC7 (SOFTWARE)
16: IC8 (SOFTWARE)
17: IC9 (SOFTWARE)
18: JC1 (SOFTWARE)
19: JC2 (SOFTWARE)
20: JC3 (SOFTWARE)
21: JC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
HC2
SOFTWARE
HIS D:222 , HIS D:226 , HIS D:232 , SER Z:45 , CL Z:101
BINDING SITE FOR RESIDUE ZN D 501
02
HC3
SOFTWARE
HIS D:172 , ASP D:174 , HIS D:187 , HIS D:200
BINDING SITE FOR RESIDUE ZN D 502
03
HC4
SOFTWARE
ASP D:179 , GLY D:180 , SER D:182 , LEU D:184 , ASP D:202 , GLU D:205
BINDING SITE FOR RESIDUE CA D 503
04
HC5
SOFTWARE
ASP D:128 , ASP D:203 , GLU D:205 , HOH D:720
BINDING SITE FOR RESIDUE CA D 504
05
HC6
SOFTWARE
ASP D:162 , ASN D:194 , GLY D:196 , ASP D:198 , HOH D:684 , HOH D:781
BINDING SITE FOR RESIDUE CA D 505
06
HC7
SOFTWARE
ASP D:291 , ASP D:335 , SER D:383 , ASP D:432 , HOH D:621 , HOH D:632 , HOH D:718
BINDING SITE FOR RESIDUE CA D 506
07
HC8
SOFTWARE
ILE D:293 , ALA D:337 , ALA D:385 , VAL D:434 , CL D:508 , CL D:509
BINDING SITE FOR RESIDUE CA D 507
08
HC9
SOFTWARE
THR D:294 , CA D:507 , HOH D:676
BINDING SITE FOR RESIDUE CL D 508
09
IC1
SOFTWARE
ILE D:293 , ALA D:337 , ALA D:385 , ALA D:433 , VAL D:434 , CA D:507
BINDING SITE FOR RESIDUE CL D 509
10
IC2
SOFTWARE
SER D:146 , THR D:149 , PRO D:150 , LEU D:151 , ASP D:270
BINDING SITE FOR RESIDUE PGO D 510
11
IC3
SOFTWARE
PHE D:252 , MET D:253 , ARG D:306 , ASN D:332
BINDING SITE FOR RESIDUE PGO D 511
12
IC4
SOFTWARE
ASN D:194 , ASP D:198
BINDING SITE FOR RESIDUE PGO D 512
13
IC5
SOFTWARE
ARG D:297 , PHE D:326 , GLY D:359 , TYR D:360
BINDING SITE FOR RESIDUE PGO D 513
14
IC6
SOFTWARE
ASP D:256 , PRO D:275 , HIS D:277 , HOH D:686
BINDING SITE FOR RESIDUE PGO D 514
15
IC7
SOFTWARE
ILE C:459 , GLU D:421 , GLY D:426 , ILE D:427 , GLY D:428 , HOH D:640
BINDING SITE FOR RESIDUE PGO D 515
16
IC8
SOFTWARE
ASP D:285 , SER D:287 , LEU D:288 , SER D:289 , LYS D:304 , HOH D:780
BINDING SITE FOR RESIDUE PGO D 516
17
IC9
SOFTWARE
PRO C:464 , HOH C:775 , ASN D:445 , ILE D:448
BINDING SITE FOR RESIDUE PGO D 517
18
JC1
SOFTWARE
TYR D:435 , LYS D:437 , GLN D:449 , ILE D:468
BINDING SITE FOR RESIDUE PGO D 518
19
JC2
SOFTWARE
LYS D:140 , ASN D:215 , TYR D:246 , GLY D:248 , LYS D:249
BINDING SITE FOR RESIDUE PGO D 519
20
JC3
SOFTWARE
THR D:110 , LYS D:112 , PRO D:191 , GLY D:192 , HOH D:736
BINDING SITE FOR RESIDUE PGO D 520
21
JC5
SOFTWARE
HIS D:222 , HIS D:226 , ZN D:501 , HOH D:714 , ARG Z:44 , SER Z:45 , TYR Z:46
BINDING SITE FOR RESIDUE CL Z 101
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Info
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
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Info
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Sorry, no Info available
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Protein & NOT Site
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Chain D
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Asymmetric Unit 1
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