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4G0D
Asym. Unit
Info
Asym.Unit (302 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (78 KB)
Biol.Unit 3 (79 KB)
Biol.Unit 4 (79 KB)
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Title
:
HUMAN COLLAGENASE 3 (MMP-13) FULL FORM WITH PEPTIDES FROM PRO-DOMAIN
Authors
:
E. A. Stura, L. Vera, R. Visse, H. Nagase, V. Dive
Date
:
09 Jul 12 (Deposition) - 21 Aug 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.54
Chains
:
Asym. Unit : A,B,C,D,W,X,Y,Z
Biol. Unit 1: A,W (1x)
Biol. Unit 2: B,X (1x)
Biol. Unit 3: C,Y (1x)
Biol. Unit 4: D,Z (1x)
Keywords
:
Protein-Peptide Complex, Collagenase, Cleavage With Mmp3, Hydrolase, Pro-Peptide, Metzincin, Zinc Metalloprotease, Collagen Cleavage, Collagen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. A. Stura, R. Visse, P. Cuniasse, V. Dive, H. Nagase
Crystal Structure Of Full-Length Human Collagenase 3 (Mmp-13) With Peptides In The Active Site Defines Exosites In The Catalytic Domain.
Faseb J. V. 27 4395 2013
[
close entry info
]
Hetero Components
(6, 86)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
1q: CALCIUM ION (CAq)
1r: CALCIUM ION (CAr)
1s: CALCIUM ION (CAs)
1t: CALCIUM ION (CAt)
1u: CALCIUM ION (CAu)
1v: CALCIUM ION (CAv)
1w: CALCIUM ION (CAw)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
5a: S-1,2-PROPANEDIOL (PGOa)
5aa: S-1,2-PROPANEDIOL (PGOaa)
5ab: S-1,2-PROPANEDIOL (PGOab)
5ac: S-1,2-PROPANEDIOL (PGOac)
5ad: S-1,2-PROPANEDIOL (PGOad)
5ae: S-1,2-PROPANEDIOL (PGOae)
5af: S-1,2-PROPANEDIOL (PGOaf)
5ag: S-1,2-PROPANEDIOL (PGOag)
5ah: S-1,2-PROPANEDIOL (PGOah)
5ai: S-1,2-PROPANEDIOL (PGOai)
5aj: S-1,2-PROPANEDIOL (PGOaj)
5ak: S-1,2-PROPANEDIOL (PGOak)
5al: S-1,2-PROPANEDIOL (PGOal)
5b: S-1,2-PROPANEDIOL (PGOb)
5c: S-1,2-PROPANEDIOL (PGOc)
5d: S-1,2-PROPANEDIOL (PGOd)
5e: S-1,2-PROPANEDIOL (PGOe)
5f: S-1,2-PROPANEDIOL (PGOf)
5g: S-1,2-PROPANEDIOL (PGOg)
5h: S-1,2-PROPANEDIOL (PGOh)
5i: S-1,2-PROPANEDIOL (PGOi)
5j: S-1,2-PROPANEDIOL (PGOj)
5k: S-1,2-PROPANEDIOL (PGOk)
5l: S-1,2-PROPANEDIOL (PGOl)
5m: S-1,2-PROPANEDIOL (PGOm)
5n: S-1,2-PROPANEDIOL (PGOn)
5o: S-1,2-PROPANEDIOL (PGOo)
5p: S-1,2-PROPANEDIOL (PGOp)
5q: S-1,2-PROPANEDIOL (PGOq)
5r: S-1,2-PROPANEDIOL (PGOr)
5s: S-1,2-PROPANEDIOL (PGOs)
5t: S-1,2-PROPANEDIOL (PGOt)
5u: S-1,2-PROPANEDIOL (PGOu)
5v: S-1,2-PROPANEDIOL (PGOv)
5w: S-1,2-PROPANEDIOL (PGOw)
5x: S-1,2-PROPANEDIOL (PGOx)
5y: S-1,2-PROPANEDIOL (PGOy)
5z: S-1,2-PROPANEDIOL (PGOz)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
23
Ligand/Ion
CALCIUM ION
2
CL
8
Ligand/Ion
CHLORIDE ION
3
GOL
5
Ligand/Ion
GLYCEROL
4
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PGO
38
Ligand/Ion
S-1,2-PROPANEDIOL
6
ZN
8
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(86, 86)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
73: IC1 (SOFTWARE)
74: IC2 (SOFTWARE)
75: IC3 (SOFTWARE)
76: IC4 (SOFTWARE)
77: IC5 (SOFTWARE)
78: IC6 (SOFTWARE)
79: IC7 (SOFTWARE)
80: IC8 (SOFTWARE)
81: IC9 (SOFTWARE)
82: JC1 (SOFTWARE)
83: JC2 (SOFTWARE)
84: JC3 (SOFTWARE)
85: JC4 (SOFTWARE)
86: JC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:222 , HIS A:226 , HIS A:232 , SER W:45 , HOH W:101
BINDING SITE FOR RESIDUE ZN A 501
02
AC2
SOFTWARE
HIS A:172 , ASP A:174 , HIS A:187 , HIS A:200
BINDING SITE FOR RESIDUE ZN A 502
03
AC3
SOFTWARE
ASP A:128 , ASP A:203 , GLU A:205
BINDING SITE FOR RESIDUE CA A 503
04
AC4
SOFTWARE
ASP A:179 , GLY A:180 , SER A:182 , LEU A:184 , ASP A:202 , GLU A:205
BINDING SITE FOR RESIDUE CA A 504
05
AC5
SOFTWARE
ASP A:162 , ASN A:194 , GLY A:196 , ASP A:198 , HOH A:750
BINDING SITE FOR RESIDUE CA A 505
06
AC6
SOFTWARE
ASP A:291 , ASP A:335 , SER A:383 , ASP A:432 , HOH A:625 , HOH A:680 , HOH A:820
BINDING SITE FOR RESIDUE CA A 506
07
AC7
SOFTWARE
ILE A:293 , ALA A:337 , ALA A:385 , VAL A:434 , CL A:508 , HOH A:746
BINDING SITE FOR RESIDUE CA A 507
08
AC8
SOFTWARE
ILE A:293 , ALA A:337 , ALA A:385 , VAL A:434 , CA A:507
BINDING SITE FOR RESIDUE CL A 508
09
AC9
SOFTWARE
ASP A:390 , HOH A:819
BINDING SITE FOR RESIDUE PGO A 509
10
BC1
SOFTWARE
ASP A:390 , THR A:391 , THR A:408
BINDING SITE FOR RESIDUE PGO A 510
11
BC2
SOFTWARE
LYS A:170 , TRP C:455
BINDING SITE FOR RESIDUE PGO A 511
12
BC3
SOFTWARE
TYR A:440 , SER A:453 , TRP A:455 , SER A:456 , VAL A:460
BINDING SITE FOR RESIDUE PGO A 512
13
BC4
SOFTWARE
MET A:253 , ARG A:306 , PGO A:514 , HOH A:817
BINDING SITE FOR RESIDUE PGO A 513
14
BC5
SOFTWARE
GLY A:237 , THR A:247 , PHE A:252 , PRO A:255 , ARG A:306 , LEU A:322 , PGO A:513 , HOH A:673 , HOH A:717
BINDING SITE FOR RESIDUE PGO A 514
15
BC6
SOFTWARE
GLY A:439 , TRP A:455
BINDING SITE FOR RESIDUE PGO A 515
16
BC7
SOFTWARE
SER A:467 , HOH A:691
BINDING SITE FOR RESIDUE PGO A 516
17
BC8
SOFTWARE
PRO A:281 , ASP A:282 , LEU A:288 , HOH A:757
BINDING SITE FOR RESIDUE PGO A 517
18
BC9
SOFTWARE
ASN A:215 , TYR A:246 , GLY A:248 , LYS A:249 , SER A:250
BINDING SITE FOR RESIDUE PGO A 518
19
CC1
SOFTWARE
GLN A:401 , PRO A:417
BINDING SITE FOR RESIDUE PGO A 519
20
CC2
SOFTWARE
TYR A:104
BINDING SITE FOR RESIDUE PEG A 520
21
CC3
SOFTWARE
HIS B:222 , HIS B:226 , HIS B:232 , SER X:45 , HOH X:107
BINDING SITE FOR RESIDUE ZN B 501
22
CC4
SOFTWARE
HIS B:172 , ASP B:174 , HIS B:187 , HIS B:200
BINDING SITE FOR RESIDUE ZN B 502
23
CC5
SOFTWARE
ASP B:128 , ASP B:203 , GLU B:205 , HOH B:653
BINDING SITE FOR RESIDUE CA B 503
24
CC6
SOFTWARE
ASP B:179 , GLY B:180 , SER B:182 , LEU B:184 , ASP B:202 , GLU B:205
BINDING SITE FOR RESIDUE CA B 504
25
CC7
SOFTWARE
ASP B:162 , ASN B:194 , GLY B:196 , ASP B:198 , HOH B:643 , HOH B:720
BINDING SITE FOR RESIDUE CA B 505
26
CC8
SOFTWARE
ASP B:291 , ASP B:335 , SER B:383 , ASP B:432 , HOH B:605 , HOH B:675 , HOH B:801
BINDING SITE FOR RESIDUE CA B 506
27
CC9
SOFTWARE
ILE B:293 , ALA B:337 , ALA B:385 , VAL B:434 , CL B:508 , CL B:510
BINDING SITE FOR RESIDUE CA B 507
28
DC1
SOFTWARE
ILE B:293 , ALA B:337 , ALA B:385 , VAL B:434 , CA B:507
BINDING SITE FOR RESIDUE CL B 508
29
DC2
SOFTWARE
SER B:146 , THR B:149 , GLY B:269 , HOH B:711
BINDING SITE FOR RESIDUE CA B 509
30
DC3
SOFTWARE
ILE B:293 , THR B:294 , TYR B:338 , CA B:507 , HOH B:641 , HOH B:736
BINDING SITE FOR RESIDUE CL B 510
31
DC4
SOFTWARE
VAL B:106 , PHE B:107 , ARG B:109
BINDING SITE FOR RESIDUE PEG B 511
32
DC5
SOFTWARE
PRO B:278 , HOH B:633
BINDING SITE FOR RESIDUE GOL B 512
33
DC6
SOFTWARE
TYR B:125 , THR B:126 , PHE B:167 , ILE B:169 , ASP B:203 , HOH B:670
BINDING SITE FOR RESIDUE PEG B 513
34
DC7
SOFTWARE
ASN B:124 , TYR B:125 , HIS B:131 , TRP C:455
BINDING SITE FOR RESIDUE PEG B 514
35
DC8
SOFTWARE
GLU B:421 , PHE B:424 , GLY B:426 , GLY B:428
BINDING SITE FOR RESIDUE PGO B 515
36
DC9
SOFTWARE
LYS B:283 , CYS B:284 , LEU B:469 , TRP B:470
BINDING SITE FOR RESIDUE GOL B 516
37
EC1
SOFTWARE
LYS B:140 , PHE B:217 , TYR B:246 , GLY B:248 , LYS B:249 , SER B:250 , HOH B:743
BINDING SITE FOR RESIDUE PGO B 517
38
EC2
SOFTWARE
HIS B:232
BINDING SITE FOR RESIDUE PGO B 518
39
EC3
SOFTWARE
ASN B:445 , ILE B:448
BINDING SITE FOR RESIDUE PGO B 519
40
EC4
SOFTWARE
GLN B:314
BINDING SITE FOR RESIDUE PGO B 520
41
EC5
SOFTWARE
HIS C:222 , HIS C:226 , HIS C:232 , SER Y:45 , CL Y:101
BINDING SITE FOR RESIDUE ZN C 501
42
EC6
SOFTWARE
HIS C:172 , ASP C:174 , HIS C:187 , HIS C:200
BINDING SITE FOR RESIDUE ZN C 502
43
EC7
SOFTWARE
ASP C:128 , ASP C:203 , GLU C:205
BINDING SITE FOR RESIDUE CA C 503
44
EC8
SOFTWARE
ASP C:179 , GLY C:180 , SER C:182 , LEU C:184 , ASP C:202 , GLU C:205
BINDING SITE FOR RESIDUE CA C 504
45
EC9
SOFTWARE
ASP C:162 , ASN C:194 , GLY C:196 , ASP C:198 , HOH C:630 , HOH C:768
BINDING SITE FOR RESIDUE CA C 505
46
FC1
SOFTWARE
ASP C:291 , ASP C:335 , SER C:383 , ASP C:432 , HOH C:621 , HOH C:656 , HOH C:709
BINDING SITE FOR RESIDUE CA C 506
47
FC2
SOFTWARE
ILE C:293 , ALA C:337 , ALA C:385 , VAL C:434 , CL C:508
BINDING SITE FOR RESIDUE CA C 507
48
FC3
SOFTWARE
ALA C:292 , ILE C:293 , ALA C:337 , ALA C:385 , CA C:507
BINDING SITE FOR RESIDUE CL C 508
49
FC4
SOFTWARE
SER C:146 , THR C:149 , HOH C:659 , HOH C:660
BINDING SITE FOR RESIDUE CA C 509
50
FC5
SOFTWARE
ILE C:243 , THR C:245 , HOH C:611 , HOH C:634
BINDING SITE FOR RESIDUE CA C 510
51
FC6
SOFTWARE
MET C:253 , PRO C:278 , ARG C:306 , ARG C:333 , PGO C:519 , HOH C:636
BINDING SITE FOR RESIDUE PGO C 511
52
FC7
SOFTWARE
GLU A:319 , HOH A:643 , ASP C:317 , ALA C:318
BINDING SITE FOR RESIDUE GOL C 512
53
FC8
SOFTWARE
GLU C:171
BINDING SITE FOR RESIDUE GOL C 513
54
FC9
SOFTWARE
THR C:300 , LEU C:311 , HIS C:312 , PRO C:313 , GLN C:315 , TRP C:470 , PGO C:515
BINDING SITE FOR RESIDUE PGO C 514
55
GC1
SOFTWARE
SER C:467 , ILE C:468 , PGO C:514
BINDING SITE FOR RESIDUE PGO C 515
56
GC2
SOFTWARE
GLN A:314 , SER C:325 , TYR C:360 , HOH C:692 , HOH C:722 , HOH C:782
BINDING SITE FOR RESIDUE PGO C 516
57
GC3
SOFTWARE
ASN C:194 , ASP C:198
BINDING SITE FOR RESIDUE PGO C 517
58
GC4
SOFTWARE
PRO B:127 , TRP C:455
BINDING SITE FOR RESIDUE PGO C 518
59
GC5
SOFTWARE
PHE C:252 , MET C:253 , ARG C:306 , PGO C:511 , PGO C:520
BINDING SITE FOR RESIDUE PGO C 519
60
GC6
SOFTWARE
THR C:247 , PHE C:252 , PRO C:255 , ARG C:306 , LEU C:322 , PGO C:519 , HOH C:776
BINDING SITE FOR RESIDUE PGO C 520
61
GC7
SOFTWARE
ASP C:282 , ASP C:285 , LEU C:288 , HOH C:637
BINDING SITE FOR RESIDUE PGO C 521
62
GC8
SOFTWARE
PRO C:417 , LEU C:419
BINDING SITE FOR RESIDUE GOL C 522
63
GC9
SOFTWARE
GLN C:263 , LEU C:265
BINDING SITE FOR RESIDUE PGO C 523
64
HC1
SOFTWARE
LYS C:140 , THR C:247 , GLY C:248 , SER C:250 , HOH C:740
BINDING SITE FOR RESIDUE PGO C 524
65
HC2
SOFTWARE
HIS D:222 , HIS D:226 , HIS D:232 , SER Z:45 , CL Z:101
BINDING SITE FOR RESIDUE ZN D 501
66
HC3
SOFTWARE
HIS D:172 , ASP D:174 , HIS D:187 , HIS D:200
BINDING SITE FOR RESIDUE ZN D 502
67
HC4
SOFTWARE
ASP D:179 , GLY D:180 , SER D:182 , LEU D:184 , ASP D:202 , GLU D:205
BINDING SITE FOR RESIDUE CA D 503
68
HC5
SOFTWARE
ASP D:128 , ASP D:203 , GLU D:205 , HOH D:720
BINDING SITE FOR RESIDUE CA D 504
69
HC6
SOFTWARE
ASP D:162 , ASN D:194 , GLY D:196 , ASP D:198 , HOH D:684 , HOH D:781
BINDING SITE FOR RESIDUE CA D 505
70
HC7
SOFTWARE
ASP D:291 , ASP D:335 , SER D:383 , ASP D:432 , HOH D:621 , HOH D:632 , HOH D:718
BINDING SITE FOR RESIDUE CA D 506
71
HC8
SOFTWARE
ILE D:293 , ALA D:337 , ALA D:385 , VAL D:434 , CL D:508 , CL D:509
BINDING SITE FOR RESIDUE CA D 507
72
HC9
SOFTWARE
THR D:294 , CA D:507 , HOH D:676
BINDING SITE FOR RESIDUE CL D 508
73
IC1
SOFTWARE
ILE D:293 , ALA D:337 , ALA D:385 , ALA D:433 , VAL D:434 , CA D:507
BINDING SITE FOR RESIDUE CL D 509
74
IC2
SOFTWARE
SER D:146 , THR D:149 , PRO D:150 , LEU D:151 , ASP D:270
BINDING SITE FOR RESIDUE PGO D 510
75
IC3
SOFTWARE
PHE D:252 , MET D:253 , ARG D:306 , ASN D:332
BINDING SITE FOR RESIDUE PGO D 511
76
IC4
SOFTWARE
ASN D:194 , ASP D:198
BINDING SITE FOR RESIDUE PGO D 512
77
IC5
SOFTWARE
ARG D:297 , PHE D:326 , GLY D:359 , TYR D:360
BINDING SITE FOR RESIDUE PGO D 513
78
IC6
SOFTWARE
ASP D:256 , PRO D:275 , HIS D:277 , HOH D:686
BINDING SITE FOR RESIDUE PGO D 514
79
IC7
SOFTWARE
ILE C:459 , GLU D:421 , GLY D:426 , ILE D:427 , GLY D:428 , HOH D:640
BINDING SITE FOR RESIDUE PGO D 515
80
IC8
SOFTWARE
ASP D:285 , SER D:287 , LEU D:288 , SER D:289 , LYS D:304 , HOH D:780
BINDING SITE FOR RESIDUE PGO D 516
81
IC9
SOFTWARE
PRO C:464 , HOH C:775 , ASN D:445 , ILE D:448
BINDING SITE FOR RESIDUE PGO D 517
82
JC1
SOFTWARE
TYR D:435 , LYS D:437 , GLN D:449 , ILE D:468
BINDING SITE FOR RESIDUE PGO D 518
83
JC2
SOFTWARE
LYS D:140 , ASN D:215 , TYR D:246 , GLY D:248 , LYS D:249
BINDING SITE FOR RESIDUE PGO D 519
84
JC3
SOFTWARE
THR D:110 , LYS D:112 , PRO D:191 , GLY D:192 , HOH D:736
BINDING SITE FOR RESIDUE PGO D 520
85
JC4
SOFTWARE
HIS C:222 , HIS C:226 , ZN C:501 , HOH C:715 , ARG Y:44 , SER Y:45 , TYR Y:46
BINDING SITE FOR RESIDUE CL Y 101
86
JC5
SOFTWARE
HIS D:222 , HIS D:226 , ZN D:501 , HOH D:714 , ARG Z:44 , SER Z:45 , TYR Z:46
BINDING SITE FOR RESIDUE CL Z 101
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
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[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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all CATH domains
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[
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]
Pfam Domains
(0, 0)
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all PFAM domains
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[
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain W
Chain X
Chain Y
Chain Z
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
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(e.g.: "#3cb371" or "60,179,113")
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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close Script example commands
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
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Asym.Unit (302 KB)
Header - Asym.Unit
Biol.Unit 1 (79 KB)
Header - Biol.Unit 1
Biol.Unit 2 (78 KB)
Header - Biol.Unit 2
Biol.Unit 3 (79 KB)
Header - Biol.Unit 3
Biol.Unit 4 (79 KB)
Header - Biol.Unit 4
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