830C - JenaLib

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Title :   COLLAGENASE-3 (MMP-13) COMPLEXED TO A SULPHONE-BASED HYDROXAMIC ACID

Authors :   B. Lovejoy, A. Welch, S. Carr, C. Luong, C. Broka, R. T. Hendricks, J. Campbell, K. Walker, R. Martin, H. Van Wart, M. F. Browner

Date :   06 Aug 98 (Deposition) - 06 Aug 99 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Matrix Metalloprotease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Lovejoy, A. R. Welch, S. Carr, C. Luong, C. Broka, R. T. Hendricks, J. A. Campbell, K. A. Walker, R. Martin, H. Van Wart, M. F. Browner
Crystal Structures Of Mmp-1 And -13 Reveal The Structural Basis For Selectivity Of Collagenase Inhibitors.
Nat. Struct. Biol. V. 6 217 1999
PubMed-ID: 10074939 | Reference-DOI: 10.1038/6657
(for further references see the PDB file header)

Molecule 1 - MMP-13
	Chains	:	A, B
	EC Number	:	3.4.24.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	CATALYTIC DOMAIN
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	CATALYTIC DOMAIN IS COMPLEXED WITH A DIPHENYL-ETHER, SULPHONE INHIBITOR
	Other Details - Source	:	HUMAN CDNA CONSTRUCT. CDNA CONSTRUCT OF PROCOLLAGENASE-3
	Synonym	:	MMP-13

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 8)

No.	Name	Count	Type	Full Name
1	CA	2	Ligand/Ion	CALCIUM ION
2	RS1	2	Ligand/Ion	4-[4-(4-CHLORO-PHENOXY)-BENZENESULFONYLMETHYL]-TETRAHYDRO-PYRAN-4-CARBOXYLIC ACID HYDROXYAMIDE
3	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	RS1	1	Ligand/Ion	4-[4-(4-CHLORO-PHENOXY)-BENZENESULFONYLMETHYL]-TETRAHYDRO-PYRAN-4-CARBOXYLIC ACID HYDROXYAMIDE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	RS1	1	Ligand/Ion	4-[4-(4-CHLORO-PHENOXY)-BENZENESULFONYLMETHYL]-TETRAHYDRO-PYRAN-4-CARBOXYLIC ACID HYDROXYAMIDE
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	RS1 A:1 , HIS A:222 , HIS A:226 , HIS A:232	BINDING SITE FOR RESIDUE ZN A 272
2	AC2	SOFTWARE	HIS A:172 , ASP A:174 , HIS A:187 , HIS A:200	BINDING SITE FOR RESIDUE ZN A 273
3	AC3	SOFTWARE	ASP A:179 , GLY A:180 , SER A:182 , LEU A:184 , ASP A:202 , GLU A:205	BINDING SITE FOR RESIDUE CA A 274
4	AC4	SOFTWARE	RS1 B:1 , HIS B:222 , HIS B:226 , HIS B:232	BINDING SITE FOR RESIDUE ZN B 272
5	AC5	SOFTWARE	HIS B:172 , ASP B:174 , HIS B:187 , HIS B:200	BINDING SITE FOR RESIDUE ZN B 273
6	AC6	SOFTWARE	ASP B:179 , GLY B:180 , SER B:182 , LEU B:184 , ASP B:202 , GLU B:205	BINDING SITE FOR RESIDUE CA B 274
7	AC7	SOFTWARE	LEU A:185 , ALA A:186 , HIS A:222 , GLU A:223 , HIS A:226 , HIS A:232 , LEU A:239 , PHE A:241 , PRO A:242 , ILE A:243 , TYR A:244 , ZN A:272 , HOH A:443	BINDING SITE FOR RESIDUE RS1 A 1
8	AC8	SOFTWARE	LEU B:185 , ALA B:186 , HIS B:222 , GLU B:223 , HIS B:226 , HIS B:232 , LEU B:239 , PHE B:241 , PRO B:242 , ILE B:243 , ZN B:272 , HOH B:415	BINDING SITE FOR RESIDUE RS1 B 1

(no "SS Bond" information available for 830C)

(no "Cis Peptide Bond" information available for 830C)

(no "SAP(SNP)/Variant" information available for 830C)

(no "PROSITE Motif" information available for 830C)

(no "Exon" information available for 830C)

Asymmetric Unit

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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains d830ca_ A: Collagenase-3 (MMP-13)                                                                                                                                    SCOP domains
               CATH domains 830cA00 A:104-271 Collagenase (Catalytic Domain)                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee........hhhhhhhhhhhhhhhhhh...eeeee......eeeeee.................eee..........eeee.............hhhhhhhhhhhh........................hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 830c A 104 YNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTFMLPDDDVQGIQSLYGPGDE 271
                                   113       123       133       143       153       163       173       183       193       203       213       223       233       243   ||  257       267    
                                                                                                                                                                         247|                   
                                                                                                                                                                          252

Chain B from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains d830cb_ B: Collagenase-3 (MMP-13)                                                                                                                                      SCOP domains
               CATH domains 830cB00 B:104-269 Collagenase (Catalytic Domain)                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee........hhhhhhhhhhhhhhhhhh...eeeee......eeeeee.................eee..........eeee.............hhhhhhhhhhhh............................hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 830c B 104 YNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYGPG 269
                                   113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263

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	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a+b) (23004)

Fold: Zincin-like (701)

Superfamily: Metalloproteases (zincins), catalytic domain (647)

Family: Matrix metalloproteases, catalytic domain (199)

Protein domain: Collagenase-3 (MMP-13) (31)

Human (Homo sapiens) [TaxId: 9606] (30)

1a	d830ca_	A:
1b	d830cb_	B:

Asymmetric Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Collagenase (Catalytic Domain) (236)

Homologous Superfamily: Collagenase (Catalytic Domain) (234)

Human (Homo sapiens) (153)

1a	830cB00	B:104-269
1b	830cA00	A:104-271

(no "Pfam Domain" information available for 830C)

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