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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN 14-3-3 SIGMA IN COMPLEX WITH A TAU-PROTEIN PEPTIDE SURROUNDING PS214
 
Authors :  B. Schumacher, C. Ottmann
Date :  14 Jun 12  (Deposition) - 11 Dec 13  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,P,Q
Biol. Unit 1:  A (1x),B (1x),P (1x),Q (1x)
Keywords :  Peptide Binding Protein, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Joo, B. Schumacher, I. Landrieu, M. Bartel, C. Smet-Nocca, A. Jang, H. S. Choi, N. L. Jeon, K. A. Chang, H. S. Kim, C. Ottmann, Y. H. Suh
Involvement Of 14-3-3 In Tubulin Instability And Impaired Axon Development Is Mediated By Tau.
Faseb J. V. 29 4133 2015
PubMed-ID: 26103986  |  Reference-DOI: 10.1096/FJ.14-265009

(-) Compounds

Molecule 1 - 14-3-3 PROTEIN SIGMA
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPROEX HTB
    Expression System Strain: ROSETTA DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: HME1, SFN
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: EPITHELIAL CELL MARKER PROTEIN 1, STRATIFIN
 
Molecule 2 - MICROTUBULE-ASSOCIATED PROTEIN TAU
    Chains: P, Q
    Engineered: YES
    Fragment: UNP RESIDUES 527-536
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NEUROFIBRILLARY TANGLE PROTEIN, PAIRED HELICAL FILAMENT-TAU, PHF-TAU
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABPQ
Biological Unit 1 (1x): A (1x)B (1x)P (1x)Q (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 19)

Asymmetric Unit (6, 19)
No.NameCountTypeFull Name
1CA6Ligand/IonCALCIUM ION
2CL2Ligand/IonCHLORIDE ION
3CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
4GOL3Ligand/IonGLYCEROL
5MG4Ligand/IonMAGNESIUM ION
6SEP2Mod. Amino AcidPHOSPHOSERINE
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
4GOL3Ligand/IonGLYCEROL
5MG-1Ligand/IonMAGNESIUM ION
6SEP1Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:136 , GLY A:137 , ASP A:138 , ASP A:139 , HOH A:663BINDING SITE FOR RESIDUE CL A 301
02AC2SOFTWARETHR A:228 , THR A:231 , HOH A:626 , HOH A:627 , HOH A:629 , HOH A:637BINDING SITE FOR RESIDUE MG A 303
03AC3SOFTWAREGLU A:86 , GLU A:89 , HOH A:633 , HOH A:634BINDING SITE FOR RESIDUE MG A 304
04AC4SOFTWAREHOH A:476 , HOH A:498 , HOH A:547 , HOH A:624 , HOH A:630 , HOH A:664BINDING SITE FOR RESIDUE CA A 305
05AC5SOFTWAREGLU A:2 , HOH A:426 , HOH A:432 , GLU B:2 , HOH B:417 , HOH B:549BINDING SITE FOR RESIDUE CA A 306
06AC6SOFTWAREGLU A:161 , HOH A:414 , HOH A:568 , HOH A:579 , HOH A:588 , HOH A:613BINDING SITE FOR RESIDUE CA A 307
07AC7SOFTWAREGLU A:35 , GLU A:110 , GLU A:188 , HOH A:500 , HOH A:591BINDING SITE FOR RESIDUE CA A 308
08AC8SOFTWAREHOH A:553 , HOH A:589 , LYS B:9BINDING SITE FOR RESIDUE CA A 309
09AC9SOFTWAREPHE A:198 , MET A:202 , THR A:217 , GLN A:221 , HOH A:621 , HOH A:635 , HOH A:636 , HOH A:651 , GLU B:110 , HOH B:531BINDING SITE FOR RESIDUE GOL A 310
10BC1SOFTWAREGLU A:17 , HOH A:639 , LYS B:159 , LYS B:160 , MET B:162 , HOH B:469 , HOH B:611BINDING SITE FOR RESIDUE GOL A 311
11BC2SOFTWAREHOH A:640 , HOH A:644 , HOH B:469 , HOH B:518 , HOH B:611BINDING SITE FOR RESIDUE MG B 301
12BC3SOFTWAREGLU A:80 , HOH A:557 , GLU B:2 , ALA B:4 , SER B:5 , HOH B:449 , HOH B:481BINDING SITE FOR RESIDUE MG B 302
13BC4SOFTWARELYS A:9 , HOH B:454 , HOH B:632BINDING SITE FOR RESIDUE CA B 303
14BC5SOFTWAREHOH A:544 , ASP B:199 , HOH B:593 , PRO P:213 , SEP P:214 , LEU P:215 , PRO P:216 , HOH P:406 , HOH P:408 , HOH P:414BINDING SITE FOR RESIDUE GOL P 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FL5)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:-4 -Ala A:-3
2Ser B:105 -His B:106

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FL5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FL5)

(-) Exons   (0, 0)

(no "Exon" information available for 4FL5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:230
                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fl5 A  -4 GAMGSMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELScEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWT 231
                                     5        15        25        35  |     45        55        65    ||  81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231
                                                                     38-CSO                          70|                                                                                                                                                          
                                                                                                      77                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:229
                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fl5 B  -4 GAMGSMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELScEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWT 231
                                     5        15        25        35  |     45        55        65    ||  82        92       102       112       122       132       142       152       162       172       182       192       202       212       222         
                                                                     38-CSO                          70|                                                                                                                                                         
                                                                                                      78                                                                                                                                                         


Chain P from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 4fl5 P 211 RTPsLPTP 218
                               |    
                             214-SEP


Chain Q from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 4fl5 Q 212 TPsLP 216
                              |  
                              |  
                            214-SEP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FL5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FL5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FL5)

(-) Gene Ontology  (81, 87)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        1433S_HUMAN | P31947: 1ywt 1yz5 3iqj 3iqu 3iqv 3lw1 3mhr 3o8i 3p1n 3p1o 3p1p 3p1q 3p1r 3p1s 3smk 3sml 3smm 3smn 3smo 3sp5 3spr 3t0l 3t0m 3u9x 3ux0 4dat 4dau 4dhm 4dhn 4dho 4dhp 4dhq 4dhr 4dhs 4dht 4dhu 4fr3 4hqw 4hru 4iea 4jc3 4jdd 4qli 4y32 4y3b 4y5i 5btv 5hf3 5ltw 5lu1 5lu2 5my9 5myc
        TAU_HUMAN | P10636: 1i8h 2mz7 2on9 3ovl 4e0m 4e0n 4e0o 4glr 4np8 4tqe 4y32 4y3b 4y5i 5dmg 5e2v 5e2w 5hf3 5k7n

(-) Related Entries Specified in the PDB File

3lw1 3mhr 3nkx 3p1n