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(-) Description

Title :  CATALYTIC DOMAIN OF HUMAN PAK4 WITH RPKPLVDP PEPTIDE
 
Authors :  B. H. Ha, T. J. Boggon
Date :  08 Jun 12  (Deposition) - 12 Sep 12  (Release) - 31 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Serine/Threonine-Protein Kinase Pak4, Kinase Domain, Protein Kinase, Atp Binding, Phosphorylation, Transferase-Peptide Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. H. Ha, M. J. Davis, C. Chen, H. J. Lou, J. Gao, R. Zhang, M. Krauthammer R. Halaban, J. Schlessinger, B. E. Turk, T. J. Boggon
Type Ii P21-Activated Kinases (Paks) Are Regulated By An Autoinhibitory Pseudosubstrate.
Proc. Natl. Acad. Sci. Usa V. 109 16107 2012
PubMed-ID: 22988085  |  Reference-DOI: 10.1073/PNAS.1214447109

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE PAK 4
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: MODIFIED PET VECTOR
    Expression System Strain: BL21(DE3)RILP
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: KIAA1142, PAK4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: P21-ACTIVATED KINASE 4, PAK-4
 
Molecule 2 - SERINE/THREONINE-PROTEIN KINASE PAK 4
    Chains: B
    EC Number: 2.7.11.1
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: P21-ACTIVATED KINASE 4, PAK-4
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SEP1Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:331 , GLN A:358 , THR A:404 , SER A:443 , ASP A:444 , PHE A:461 , LEU A:475 , VAL A:476 , GLY A:477 , TYR A:480 , TRP A:481 , GLU A:507 , HOH A:692 , HOH B:102BINDING SITE FOR CHAIN B OF SERINE/THREONINE- PROTEIN KINASE PAK 4

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FII)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FII)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FII)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FII)

(-) Exons   (0, 0)

(no "Exon" information available for 4FII)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:292
                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh...hhhh.eeeeeeeee....eeeeeee.....eeeeeeee.hhh.hhhhhhhhhhhhhhh.......eeeeeee..eeeeee.....eehhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee.hhhhhee.............hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh......hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fii A 299 VSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKsLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPPASIVPLMRQNRT 590
                                   308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468     | 478       488       498       508       518       528       538       548       558       568       578       588  
                                                                                                                                                                                                         474-SEP                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 4fii B  49 RPKPLV  54
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FII)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FII)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FII)

(-) Gene Ontology  (25, 25)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAK4_HUMAN | O96013: 2bva 2cdz 2j0i 2ov2 2q0n 2x4z 4app 4fie 4fif 4fig 4fih 4fij 4jdh 4jdi 4jdj 4jdk 4l67 4njd 4o0v 4o0x 4o0y 4xbr 4xbu 5bms 5i0b

(-) Related Entries Specified in the PDB File

4fie 4fif 4fig 4fih 4fij