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Title :   CATALYTIC DOMAIN OF HUMAN PAK4

Authors :   B. H. Ha, T. J. Boggon

Date :   08 Jun 12 (Deposition) - 12 Sep 12 (Release) - 31 Oct 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.01

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Serine/Threonine-Protein Kinase Pak4, Kinase Domain, Protein Kinase, Atp Binding, Phosphorylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. H. Ha, M. J. Davis, C. Chen, H. J. Lou, J. Gao, R. Zhang, M. Krauthammer R. Halaban, J. Schlessinger, B. E. Turk, T. J. Boggon
Type Ii P21-Activated Kinases (Paks) Are Regulated By An Autoinhibitory Pseudosubstrate.
Proc. Natl. Acad. Sci. Usa V. 109 16107 2012
PubMed-ID: 22988085 | Reference-DOI: 10.1073/PNAS.1214447109

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE PAK 4
	Chains	:	A, B
	EC Number	:	2.7.11.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	MODIFIED PET VECTOR
	Expression System Strain	:	BL21(DE3)RILP
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	KIAA1142, PAK4
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	P21-ACTIVATED KINASE 4, PAK-4

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 6)

No.	Name	Count	Type	Full Name
1	ANP	2	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2	MG	2	Ligand/Ion	MAGNESIUM ION
3	SEP	2	Mod. Amino Acid	PHOSPHOSERINE

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	ANP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	SEP	1	Mod. Amino Acid	PHOSPHOSERINE

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	ANP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	SEP	1	Mod. Amino Acid	PHOSPHOSERINE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:329 , GLY A:330 , SER A:331 , THR A:332 , VAL A:335 , LYS A:350 , GLU A:366 , GLU A:396 , PHE A:397 , LEU A:398 , ASP A:440 , LEU A:447 , ASP A:458 , GLY A:460 , PHE A:461 , MG A:1002	BINDING SITE FOR RESIDUE ANP A 1001
2	AC2	SOFTWARE	ANP A:1001	BINDING SITE FOR RESIDUE MG A 1002
3	AC3	SOFTWARE	ANP B:602	BINDING SITE FOR RESIDUE MG B 601
4	AC4	SOFTWARE	GLU B:329 , GLY B:330 , SER B:331 , THR B:332 , VAL B:335 , LYS B:350 , GLU B:366 , MET B:395 , GLU B:396 , LEU B:398 , ASP B:440 , LEU B:447 , ASP B:458 , GLY B:460 , PHE B:461 , MG B:601	BINDING SITE FOR RESIDUE ANP B 602

(no "SS Bond" information available for 4FIG)

(no "Cis Peptide Bond" information available for 4FIG)

(no "SAP(SNP)/Variant" information available for 4FIG)

(no "PROSITE Motif" information available for 4FIG)

(no "Exon" information available for 4FIG)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:293
                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4figa_ A: automated matches                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh...hhhh.eeeeeeeee....eeeeeee.....eeeeeeee.hhh.hhhhhhhhhhhhhhh.......eeeeeee..eeeeeee....eehhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee.hhhhhee.............hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh...........hhhhhhhhhhhh........hhhhhhhhhhhhhh.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fig A 298 RVSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKsLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPPASIVPLMRQNRT 590
                                   307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467      |477       487       497       507       517       527       537       547       557       567       577       587   
                                                                                                                                                                                                          474-SEP

Chain B from PDB  Type:PROTEIN  Length:293
                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4figb_ B: automated matches                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhh.eeeeeeeee....eeeeeee.....eeeeeeee.hhh.hhhhhhhhhhhhhhh.......eeeeeee..eeeeeee....eehhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee.hhhhhee..................hhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh...........hhhhhhhhhhhh........hhhhhhhhhhhhhh.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fig B 298 RVSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKsLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPPASIVPLMRQNRT 590
                                   307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467      |477       487       497       507       517       527       537       547       557       567       577       587   
                                                                                                                                                                                                          474-SEP

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Protein kinase-like (PK-like) (2589)

Superfamily: Protein kinase-like (PK-like) (2589)

Family: automated matches (529)

Protein domain: automated matches (529)

Human (Homo sapiens) [TaxId: 9606] (438)

1a	d4figa_	A:
1b	d4figb_	B:

(no "CATH Domain" information available for 4FIG)

(no "Pfam Domain" information available for 4FIG)

Asymmetric Unit(hide GO term definitions)

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	Cis Peptide Bonds
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		Biological Unit 2	[ Jena3D ]

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Description

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Ligands, Modified Residues, Ions (3, 6)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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