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(-) Description

Title :  CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF PAK4
 
Authors :  W. Wang, J. Song
Date :  12 Jun 13  (Deposition) - 14 Aug 13  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Catalytic Domain Of Pak4, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Wang, L. Lim, Y. Baskaran, E. Manser, J. Song
Nmr Binding And Crystal Structure Reveal That Intrinsically-Unstructured Regulatory Domain Auto-Inhibits Pak4 By A Mechanism Different For That Of Pak1
Biochem. Biophys. Res. Commun. V. 438 169 2013
PubMed-ID: 23876315  |  Reference-DOI: 10.1016/J.BBRC.2013.07.047

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE PAK 4
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PYS5M
    Expression System Strain: BL21-CONDONPLUS RP
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 300-591
    Gene: PAK4, KIAA1142
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: P21-ACTIVATED KINASE 4, PAK-4
 
Molecule 2 - SERINE/THREONINE-PROTEIN KINASE PAK 4
    Chains: B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-4T-1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 36-60
    Gene: PAK4, KIAA1142
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: P21-ACTIVATED KINASE 4, PAK-4

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SEP1Mod. Amino AcidPHOSPHOSERINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SEP1Mod. Amino AcidPHOSPHOSERINE
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1SEP-1Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (0, 0)

(no "Site" information available for 4L67)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L67)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Asp A:372 -Tyr A:373
2Tyr A:373 -Gln A:374
3Asn A:588 -Arg A:589
4Gln B:40 -Ser B:41

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L67)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L67)

(-) Exons   (0, 0)

(no "Exon" information available for 4L67)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4l67a_ A: automated matches                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh.....hhhh.eeeeee........eeeeee.....eeeeeeee.......hhhhhhhhh...........eeeeeee..eeeeee.....eehhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.....................hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh......hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l67 A 300 SHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKsLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPPASIVPLMRQNR 589
                                   309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469    |  479       489       499       509       519       529       539       549       559       569       579       589
                                                                                                                                                                                                        474-SEP                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:20
                                                    
               SCOP domains -------------------- SCOP domains
               CATH domains -------------------- CATH domains
               Pfam domains -------------------- Pfam domains
         Sec.struct. author ..hhhhhh............ Sec.struct. author
                 SAPs(SNPs) -------------------- SAPs(SNPs)
                    PROSITE -------------------- PROSITE
                 Transcript -------------------- Transcript
                 4l67 B  39 WQSLIEESARRPKPLVDPAC  58
                                    48        58
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L67)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L67)

(-) Gene Ontology  (25, 25)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn A:588 - Arg A:589   [ RasMol ]  
    Asp A:372 - Tyr A:373   [ RasMol ]  
    Gln B:40 - Ser B:41   [ RasMol ]  
    Tyr A:373 - Gln A:374   [ RasMol ]  
 
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  4l67
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  PAK4_HUMAN | O96013
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAK4_HUMAN | O96013: 2bva 2cdz 2j0i 2ov2 2q0n 2x4z 4app 4fie 4fif 4fig 4fih 4fii 4fij 4jdh 4jdi 4jdj 4jdk 4njd 4o0v 4o0x 4o0y 4xbr 4xbu 5bms 5i0b

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4L67)