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(-) Description

Title :  CATALYTIC DOMAIN OF HUMAN PAK4 WITH RPKPLVDP PEPTIDE
 
Authors :  B. H. Ha, T. J. Boggon
Date :  08 Jun 12  (Deposition) - 12 Sep 12  (Release) - 31 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Serine/Threonine-Protein Kinase Pak4, Kinase Domain, Protein Kinase, Atp Binding, Phosphorylation, Transferase-Peptide Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. H. Ha, M. J. Davis, C. Chen, H. J. Lou, J. Gao, R. Zhang, M. Krauthammer R. Halaban, J. Schlessinger, B. E. Turk, T. J. Boggon
Type Ii P21-Activated Kinases (Paks) Are Regulated By An Autoinhibitory Pseudosubstrate.
Proc. Natl. Acad. Sci. Usa V. 109 16107 2012
PubMed-ID: 22988085  |  Reference-DOI: 10.1073/PNAS.1214447109

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE PAK 4
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: MODIFIED PET VECTOR
    Expression System Strain: BL21(DE3)RILP
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: KIAA1142, PAK4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: P21-ACTIVATED KINASE 4, PAK-4
 
Molecule 2 - SERINE/THREONINE-PROTEIN KINASE PAK 4
    Chains: C, D
    EC Number: 2.7.11.1
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: SYNTHESIZED PEPTIDE SEQUENCE: RPKPLVDP
    Synonym: P21-ACTIVATED KINASE 4, PAK-4
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2SEP2Mod. Amino AcidPHOSPHOSERINE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2SEP1Mod. Amino AcidPHOSPHOSERINE
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2SEP1Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:329 , GLY A:330 , SER A:331 , THR A:332 , VAL A:335 , ALA A:348 , LYS A:350 , GLU A:366 , MET A:395 , GLU A:396 , LEU A:398 , LEU A:447 , ASP A:458 , PHE A:459 , GLY A:460 , PHE A:461 , HOH A:1118 , HOH A:1119 , HOH A:1125BINDING SITE FOR RESIDUE ANP A 1000
2AC2SOFTWAREGLU B:329 , GLY B:330 , SER B:331 , THR B:332 , VAL B:335 , ALA B:348 , LYS B:350 , GLU B:366 , MET B:395 , GLU B:396 , PHE B:397 , LEU B:398 , LEU B:447 , ASP B:458 , PHE B:459 , GLY B:460 , PHE B:461 , HOH B:1118 , HOH B:1119 , HOH B:1130BINDING SITE FOR RESIDUE ANP B 1000
3AC3SOFTWARESER A:331 , GLN A:358 , ARG A:359 , THR A:404 , SER A:443 , ASP A:444 , PHE A:461 , LEU A:475 , VAL A:476 , GLY A:477 , TYR A:480 , TRP A:481 , GLU A:507BINDING SITE FOR CHAIN C OF SERINE/THREONINE- PROTEIN KINASE PAK 4
4AC4SOFTWARESER B:331 , ARG B:359 , THR B:404 , ASP B:444 , LEU B:475 , VAL B:476 , GLY B:477 , PRO B:479 , TYR B:480 , TRP B:481 , GLU B:507 , PHE B:516BINDING SITE FOR CHAIN D OF SERINE/THREONINE- PROTEIN KINASE PAK 4

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FIF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FIF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FIF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FIF)

(-) Exons   (0, 0)

(no "Exon" information available for 4FIF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:294
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh...hhhh.eeeeeeeee...eeeeeeee.....eeeeeeee.hhh.hhhhhhhhhhhhhhh.......eeeeeee..eeeeee.....eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.............hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh...........hhhhhhhhhhhh........hhhhhhhhhhhhhh.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4fif A 296 PQRVSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKsLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPPASIVPLMRQNR 589
                                   305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585    
                                                                                                                                                                                                            474-SEP                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:293
                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh...hhhh.eeeeeeeee....eeeeeee.....eeeeeeee.hhh.hhhhhhhhhhhhhhh.......eeeeeee..eeeeee.....eehhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.............hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh......hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fif B 297 QRVSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKsLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPPASIVPLMRQNR 589
                                   306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586   
                                                                                                                                                                                                           474-SEP                                                                                                               


Chain C from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 4fif C  49 RPKPLVD  55


Chain D from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 4fif D  49 RPKPLVD  55
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FIF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FIF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FIF)

(-) Gene Ontology  (25, 25)

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  4fif
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  PAK4_HUMAN | O96013
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 Related Entries

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UniProtKB/Swiss-Prot
        PAK4_HUMAN | O96013: 2bva 2cdz 2j0i 2ov2 2q0n 2x4z 4app 4fie 4fig 4fih 4fii 4fij 4jdh 4jdi 4jdj 4jdk 4l67 4njd 4o0v 4o0x 4o0y 4xbr 4xbu 5bms 5i0b

(-) Related Entries Specified in the PDB File

4fie 4fig 4fih 4fii 4fij