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(-) Description

Title :  CRYSTAL STRUCTURE OF A COVALENTLY FUSED NBS1-MRE11 COMPLEX WITH TWO MANGANESE IONS PER ACTIVE SITE
 
Authors :  C. B. Schiller, K. Lammens, K. P. Hopfner
Date :  23 May 12  (Deposition) - 20 Jun 12  (Release) - 25 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dna Double-Strand Break Repair, Nuclease, Hydrolase, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. B. Schiller, K. Lammens, I. Guerini, B. Coordes, H. Feldmann, F. Schlauderer, C. Mockel, A. Schele, K. Strasser, S. P. Jackson, K. P. Hopfner
Structure Of Mre11-Nbs1 Complex Yields Insights Into Ataxia-Telangiectasia-Like Disease Mutations And Dna Damage Signaling.
Nat. Struct. Mol. Biol. V. 19 693 2012
PubMed-ID: 22705791  |  Reference-DOI: 10.1038/NSMB.2323

(-) Compounds

Molecule 1 - DNA REPAIR AND TELOMERE MAINTENANCE PROTEIN NBS1,DNA REPAIR PROTEIN RAD32 CHIMERIC PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP O43070 RESIDUES 474-531, UNP Q09683 RESIDUES 15-413
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 284812
    Strain: 972 / ATCC 24843

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MN4Ligand/IonMANGANESE (II) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:1065 , ASN A:1133 , HIS A:1222 , HIS A:1250 , MN A:1502BINDING SITE FOR RESIDUE MN A 1501
2AC2SOFTWAREASP A:1025 , HIS A:1027 , ASP A:1065 , HIS A:1252 , MN A:1501BINDING SITE FOR RESIDUE MN A 1502
3AC3SOFTWAREASP B:1025 , HIS B:1027 , ASP B:1065 , HIS B:1252 , MN B:1502BINDING SITE FOR RESIDUE MN B 1501
4AC4SOFTWAREASP B:1065 , ASN B:1133 , HIS B:1222 , HIS B:1250 , MN B:1501BINDING SITE FOR RESIDUE MN B 1502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FBQ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:1323 -Ser A:1324

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FBQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FBQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4FBQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:418
                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh....eeeee.............eeeeeee...............hhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhh.......eeeee......hhhhh........eee.........hhhhhhhhh...ee........eee..eeeee..eeeeeeee...hhhhhhhhhhh..eeeeee......eeeeeeee............hhhhh.....eeeee.....eeeeeee....eeeee.........hhhhh...eeeeeeee..eeeeeeee......eeeeeee.hhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeee........hhhhhhhhhh.........eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fbq A  477 DDKAFEENRRLRNLGSVEYIRRKNFKKFQKSENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPCELELLSDTTAVCNINYLDPNINVAIPVFSIHGNHDDRYSALDILQVTGLVNYFGRVPENNIVVSPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFIMKDIILSEVSSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQGTVPVVENEKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGRVANATDVVQFYLKK 1413
                                   486       496||     526||    1023      1033      1043      1053      1063      1073      1083      1093      1109      1119      1129      1144      1154      1164|     1175      1185      1195      1205      1215      1225      1235      1245      1255      1265      1275      1285      1295      1305      1315      1325      1335      1345      1355      1365      1375      1385      1395      1405        
                                              497|     526||                                                                                   1102|                       1136|                  1164|                                                                                                                                                                                                                                                       
                                               518      541|                                                                                    1109                        1142                   1166                                                                                                                                                                                                                                                       
                                                        1015                                                                                                                                                                                                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:402
                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhh....eeeee...eeeeee...............hhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhh.......ee......hhhhh........eee..........hhhhhhhhh...ee.........eee..eeeee..eeeeeeee...hhhhhhhhhhh..eeeeee......eeeeeeee............hhhhh.....eeeee.....eeeeeee....eeeee.........hhhhhh..eeeeeeee..eeeeeeee......eeeeeee.hhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeee........hhhhhhhh...........eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4fbq B  480 AFEENRRLRNLGSVEYIENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPCELELLSAVCNINYLDPNINVAIPVFSIHGNHDDGRYSALDILQVTGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFIMKDIILSEVSSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQGTVPVVENEKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGRVANATDVVQFYLK 1412
                                   489      1017      1027      1037      1047      1057      1067      1077      1087      1097  ||  1116      1126      1136|     1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260      1270      1280      1290      1300      1310      1320      1330      1340      1350      1360      1370      1380      1390      1400      1410  
                                          496|                                                                                 1100|                      1136|                                                                                                                                                                                                                                                                               
                                          1015                                                                                  1110                       1141
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FBQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FBQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FBQ)

(-) Gene Ontology  (37, 46)

Asymmetric/Biological Unit(hide GO term definitions)

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  4fbq
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  NBS1_SCHPO | O43070
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  RAD32_SCHPO | Q09683
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NBS1_SCHPO | O43070: 3hue 3huf 3i0m 3i0n 4fbk 4fbw
        RAD32_SCHPO | Q09683: 4fbk 4fbw 4fcx

(-) Related Entries Specified in the PDB File

4fbk 4fbw 4fcx