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(-) Description

Title :  S.POMBE MRE11 APOENZYM
 
Authors :  C. B. Schiller, K. Lammens, K. P. Hopfner
Date :  25 May 12  (Deposition) - 20 Jun 12  (Release) - 25 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A (1x),B (1x)
Keywords :  Dna Double-Strand Break Repair, Nuclease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. B. Schiller, K. Lammens, I. Guerini, B. Coordes, H. Feldmann, F. Schlauderer, C. Mockel, A. Schele, K. Strasser, S. P. Jackson, K. P. Hopfner
Structure Of Mre11-Nbs1 Complex Yields Insights Into Ataxia-Telangiectasia-Like Disease Mutations And Dna Damage Signaling.
Nat. Struct. Mol. Biol. V. 19 693 2012
PubMed-ID: 22705791  |  Reference-DOI: 10.1038/NSMB.2323

(-) Compounds

Molecule 1 - DNA REPAIR PROTEIN RAD32
    Chains: B, A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: MRE11 AMINO ACIDS 15-413
    Gene: RAD32, SPAC13C5.07
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 284812
    Strain: 972 / ATCC 24843

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1MN4Ligand/IonMANGANESE (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:192 , ASP B:25 , HIS B:27 , ASP B:65 , HIS B:250 , HIS B:252 , MN B:502BINDING SITE FOR RESIDUE MN B 501
2AC2SOFTWAREGLU A:192 , ASP B:65 , ASN B:133 , HIS B:222 , HIS B:250 , MN B:501BINDING SITE FOR RESIDUE MN B 502
3AC3SOFTWAREASP A:65 , ASN A:133 , HIS A:222 , HIS A:250 , MN A:502 , GLU B:192BINDING SITE FOR RESIDUE MN A 501
4AC4SOFTWAREASP A:25 , HIS A:27 , ASP A:65 , HIS A:252 , MN A:501 , GLU B:192BINDING SITE FOR RESIDUE MN A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FCX)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Val B:111 -Cys B:112
2Arg B:142 -Tyr B:143
3Tyr B:143 -Ser B:144
4Ser A:14 -Glu A:15
5Pro A:93 -Cys A:94
6Ser A:323 -Ser A:324

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FCX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FCX)

(-) Exons   (0, 0)

(no "Exon" information available for 4FCX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:366
                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeee............hhhhhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhh.......ee............eee.....hhhhhhhhh..eee.........eee..eeeee..eeeeeeee...hhhhhhhhhhh..eee.........eeeeeee.............hhhhh.....eeee......eeeeeee....eeeee.........hhhhhh..eeeeeeee..eeeeeeee......eeeeeee.hhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee........hhhhhhhhhh.........eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4fcx A  13 GSENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPCELELLSLDPNINVAIPVFSIHGNYSALDILQVTGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFIMKDIILSEVSSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQGKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGRVANATDVVQFYL 411
                                    22        32        42        52        62        72        82        92       118       128    || 147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357 ||    375       385       395       405      
                                                                                                                 100|             133|                                                                                                                                                                                                                     359|                                           
                                                                                                                  117              143                                                                                                                                                                                                                      368                                           


Chain B from PDB  Type:PROTEIN  Length:369
                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...............hhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhh.......eeee................eee........hhhhhhhhh..eee.........eee..eeeee..eeeeeee....hhhhhhhhhhh..eee..........eeeeee.......hhhhh.hhhhh.....eeee......eeeeeee....eeeee.........hhhhh...eeeeeeee..eeeeeeee......eeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhhh............eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fcx B  14 SENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPCELELLSVCNINYLDPNINVAIPVFSIHGNHDRYSALDILQVTGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFIMKDIILSEVSVENKKEVLTYLISKVEEAITEANAQWYEAQEKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGRVANATDVVQFYL 411
                                    23        33        43        53        63        73        83        93      |113       123       133 ||    149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319   ||  334       344       354   ||  372       382       392       402         
                                                                                                                100|                     135|                                                                                                                                                                                  323|                          358|                                            
                                                                                                                 111                      142                                                                                                                                                                                   329                           367
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FCX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FCX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FCX)

(-) Gene Ontology  (25, 25)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
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    Ser A:323 - Ser A:324   [ RasMol ]  
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  4fcx
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  RAD32_SCHPO | Q09683
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RAD32_SCHPO | Q09683: 4fbk 4fbq 4fbw

(-) Related Entries Specified in the PDB File

4fbk 4fbq 4fbw