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(-) Description

Title :  CRYSTAL STRUCTURE OF A COVALENTLY FUSED NBS1-MRE11 COMPLEX WITH ONE MANGANESE ION PER ACTIVE SITE
 
Authors :  C. B. Schiller, K. Lammens, K. P. Hopfner
Date :  23 May 12  (Deposition) - 20 Jun 12  (Release) - 25 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.38
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dna Double-Strand Break Repair, Nuclease, Schizosaccharomyces Pombe, Hydrolase, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. B. Schiller, K. Lammens, I. Guerini, B. Coordes, H. Feldmann, F. Schlauderer, C. Mockel, A. Schele, K. Strasser, S. P. Jackson, K. P. Hopfner
Structure Of Mre11-Nbs1 Complex Yields Insights Into Ataxia-Telangiectasia-Like Disease Mutations And Dna Damage Signaling.
Nat. Struct. Mol. Biol. V. 19 693 2012
PubMed-ID: 22705791  |  Reference-DOI: 10.1038/NSMB.2323

(-) Compounds

Molecule 1 - DNA REPAIR AND TELOMERE MAINTENANCE PROTEIN NBS1,DNA REPAIR PROTEIN RAD32 CHIMERIC PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP O43070 RESIDUES 474-531, UNP Q09683 RESIDUES 15-413
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1MN2Ligand/IonMANGANESE (II) ION
2SO44Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:1065 , ILE A:1066 , PHE A:1067 , HIS A:1131 , GLY A:1132 , HIS A:1134 , LEU A:1146 , HOH A:1648 , HOH A:1656 , HOH A:1693BINDING SITE FOR RESIDUE SO4 A 1501
2AC2SOFTWARELYS A:1071 , HOH A:1618 , SER B:1073 , ARG B:1074BINDING SITE FOR RESIDUE SO4 A 1502
3AC3SOFTWARESER A:1073 , ARG A:1074 , HOH A:1607 , LYS B:1071BINDING SITE FOR RESIDUE SO4 A 1503
4AC4SOFTWAREASP A:1025 , HIS A:1027 , ASP A:1065 , HIS A:1250 , HIS A:1252BINDING SITE FOR RESIDUE MN A 1504
5AC5SOFTWAREASP B:1065 , ILE B:1066 , PHE B:1067 , HIS B:1131 , GLY B:1132 , HIS B:1134 , LEU B:1146 , HOH B:1640 , HOH B:1657BINDING SITE FOR RESIDUE SO4 B 1501
6AC6SOFTWAREASP B:1025 , HIS B:1027 , ASP B:1065 , HIS B:1250 , HIS B:1252BINDING SITE FOR RESIDUE MN B 1502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FBK)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Asp A:1108 -Thr A:1109
2Ser A:1323 -Ser A:1324
3Pro B:1327 -Met B:1328
4Gly B:1382 -Gly B:1383

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FBK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FBK)

(-) Exons   (0, 0)

(no "Exon" information available for 4FBK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeee...............eeeeee...............hhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhh.......eeeee....................eee............hhhhhhhhh...ee.........eee..eeeee..eeeeeee....hhhhhhhhhhh..eeeeee..hhh.eeeeeeee............hhhhh.....eeeee.....eeeeeee....eeeee.........hhhhh...eeeeeeee..eeeeeeee......eeeeeee.hhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeee........hhhhhhhhhh.........eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fbk A  477 DDKAFEENRRLRNLGSVEYIRIRKNFKKFQKSENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPCELELLSDTDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGRYSALDILQVTGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFIMKDIILSEVSSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQGTVPVVENEKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGRVANATDVVQFYLKK 1413
                                   486       496 ||    525|||   1022      1032      1042      1052      1062      1072      1082      1092      1102|     1117      1127      1137 ||   1149      1159      1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279      1289      1299      1309      1319      1329      1339      1349      1359      1369      1379      1389      1399      1409    
                                               498|     526||                                                                                   1102|                           1139|                                                                                                                                                                                                                                                                               
                                                518      541|                                                                                    1108                            1142                                                                                                                                                                                                                                                                               
                                                         1015                                                                                                                                                                                                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:406
                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh....eeeee.....eeeeee...............hhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhh.......ee.....hhhhh........eee............hhhhhhhhh...ee.........eee..eeeee..eeeeeee....hhhhhhhhhhh..eeeeee..hhh.eeeeeeee............hhhhh.....eeeee.....eeeeeee....eeeee.........hhhhh...eeeeeeee..eeeeeeee......eeeeeee.hhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeee........hhhhhhhhhh.........eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4fbk B  480 AFEENRRLRNLGSVEYIRSENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPCELELLSVCNINYLDPNINVAIPVFSIHGNHDDPSGRYSALDILQVTGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFIMKDIILSEVSSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQGTVPVVENEKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGRVANATDVVQFYLKK 1413
                                   489      1015      1025      1035      1045      1055      1065      1075      1085      1095    ||1115      1125      1135  ||  1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      1257      1267      1277      1287      1297      1307      1317      1327      1337      1347      1357      1367      1377      1387      1397      1407      
                                           497||                                                                                 1100|                       1138|                                                                                                                                                                                                                                                                                
                                            541|                                                                                  1111                        1141                                                                                                                                                                                                                                                                                
                                            1015
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FBK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FBK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FBK)

(-) Gene Ontology  (37, 46)

Asymmetric/Biological Unit(hide GO term definitions)

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  4fbk
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  NBS1_SCHPO | O43070
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  RAD32_SCHPO | Q09683
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NBS1_SCHPO | O43070: 3hue 3huf 3i0m 3i0n 4fbq 4fbw
        RAD32_SCHPO | Q09683: 4fbq 4fbw 4fcx

(-) Related Entries Specified in the PDB File

4fbq 4fbw 4fcx