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(-) Description

Title :  CRYSTAL STRUCTURE OF AN UNFUSED MRE11-NBS1 COMPLEX WITH TWO MANGANESE IONS PER ACTIVE SITE
 
Authors :  C. B. Schiller, K. Lammens, K. P. Hopfner
Date :  23 May 12  (Deposition) - 20 Jun 12  (Release) - 25 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Biol. Unit 3:  A,B,C,D  (1x)
Keywords :  Dna Double-Strand Break Repair, Nuclease, Hydrolase, Hydrolase- Protein Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. B. Schiller, K. Lammens, I. Guerini, B. Coordes, H. Feldmann, F. Schlauderer, C. Mockel, A. Schele, K. Strasser, S. P. Jackson, K. P. Hopfner
Structure Of Mre11-Nbs1 Complex Yields Insights Into Ataxia-Telangiectasia-Like Disease Mutations And Dna Damage Signaling.
Nat. Struct. Mol. Biol. V. 19 693 2012
PubMed-ID: 22705791  |  Reference-DOI: 10.1038/NSMB.2323

(-) Compounds

Molecule 1 - DNA REPAIR PROTEIN RAD32
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: MRE11 AMINO ACIDS 7-413
    Gene: RAD32, SPAC13C5.07
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 284812
    Strain: 972 / ATCC 24843
 
Molecule 2 - DNA REPAIR AND TELOMERE MAINTENANCE PROTEIN NBS1
    Chains: C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: NBS1 AMINO ACIDS 474-531
    Gene: NBS1, SPBC6B1.09C
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 284812
    Strain: 972 / ATCC 24843

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D
Biological Unit 3 (1x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1MN4Ligand/IonMANGANESE (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:65 , ASN A:133 , HIS A:222 , HIS A:250 , MN A:502BINDING SITE FOR RESIDUE MN A 501
2AC2SOFTWAREASP A:25 , HIS A:27 , ASP A:65 , HIS A:252 , MN A:501BINDING SITE FOR RESIDUE MN A 502
3AC3SOFTWAREASP B:65 , ASN B:133 , HIS B:222 , HIS B:250 , MN B:502BINDING SITE FOR RESIDUE MN B 501
4AC4SOFTWAREASP B:25 , HIS B:27 , ASP B:65 , HIS B:252 , MN B:501BINDING SITE FOR RESIDUE MN B 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FBW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FBW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FBW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FBW)

(-) Exons   (0, 0)

(no "Exon" information available for 4FBW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:379
                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...............hhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhh.......eeee.hhhhh........eee..hhhhh..hhhhhhhhh...ee......eee..eeeee..eeeeeeee...hhhhhhhhhhh..eeeeee.......eeeeeee............hhhhh.....eeeee.....eeeeeee....eeeee.........hhhhhh..eeeeeeee..eeeeeeee......eeeeeee.hhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeee........hhhhhhhh...........eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fbw A  14 NENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPCELELLSNINYLDPNINVAIPVFSIHGNHDDRYSALDILQVTGLVNYFGRVPNIVVSPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFIMKDIILSEVSSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQGTVPVVENEKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGRVANATDVVQFYLK 412
                                    23        33        43        53        63        73        83        93      |115       125       135||     150       160 ||    173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403         
                                                                                                                100|                    136|                 162|                                                                                                                                                                                                                                                      
                                                                                                                 113                     142                  166                                                                                                                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:386
                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...............hhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhh.......ee.......hhhhh........eee.........hhhhhhhhh...ee.........eee..eeeee..eeeeeeee...hhhhhhhhhhh..eeeeee.......eeeeeee............hhhhh.....eeeee.....eeeeeee....eeeee.........hhhhhh..eeeeeeee..eeeeeeee......eeeeeee.hhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeee........hhhhhhhh...........eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fbw B  14 NENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGDKPCELELLSDAVCNINYLDPNINVAIPVFSIHGNHDDRYSALDILQVTGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFIMKDIILSEVSSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQGTVPVVENEKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGRVANATDVVQFYLK 412
                                    23        33        43        53        63        73        83        93       111       121       131    || 146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406      
                                                                                                                 101|                       136|                                                                                                                                                                                                                                                                              
                                                                                                                  110                        142                                                                                                                                                                                                                                                                              


Chain C from PDB  Type:PROTEIN  Length:21
                                                     
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author ........eeeee........ Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                 4fbw C 484 NRRLRNLGSVEYIRNFKKFQK 526
                                   493   ||  525 
                                       497|      
                                        520      


Chain D from PDB  Type:PROTEIN  Length:16
                                                
               SCOP domains ---------------- SCOP domains
               CATH domains ---------------- CATH domains
               Pfam domains ---------------- Pfam domains
         Sec.struct. author .hhhhh....eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------- SAPs(SNPs)
                    PROSITE ---------------- PROSITE
                 Transcript ---------------- Transcript
                 4fbw D 482 EENRRLRNLGSVEYIR 497
                                   491
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FBW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FBW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FBW)

(-) Gene Ontology  (37, 46)

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  RAD32_SCHPO | Q09683
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NBS1_SCHPO | O43070: 3hue 3huf 3i0m 3i0n 4fbk 4fbq
        RAD32_SCHPO | Q09683: 4fbk 4fbq 4fcx

(-) Related Entries Specified in the PDB File

4fbk 4fbq 4fcx