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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE CATENIN BETA-59 IN 8.3M UREA
 
Authors :  C. Wang, G. Y. Zhang
Date :  26 Apr 12  (Deposition) - 01 May 13  (Release) - 01 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.34
Chains :  Asym./Biol. Unit :  A
Keywords :  Mouse Beta Catenin, Urea, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Wang, G. Y. Zhang
Crystal Structure Of Mouse Catenin Beta-59 In 8. 3M Urea
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CATENIN BETA-1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA2
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 134-671
    Gene: CTNNB1, CATNB
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: BETA-CATENIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 56)

Asymmetric/Biological Unit (1, 56)
No.NameCountTypeFull Name
1URE56Ligand/IonUREA

(-) Sites  (56, 56)

Asymmetric Unit (56, 56)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:330 , TYR A:331 , HOH A:815BINDING SITE FOR RESIDUE URE A 701
02AC2SOFTWARETHR A:332 , GLU A:334 , ASP A:372 , HOH A:806BINDING SITE FOR RESIDUE URE A 702
03AC3SOFTWAREARG A:474 , LEU A:644 , HIS A:645 , SER A:646 , ALA A:652BINDING SITE FOR RESIDUE URE A 703
04AC4SOFTWARELEU A:286 , LYS A:288 , TYR A:331 , URE A:747 , HOH A:823BINDING SITE FOR RESIDUE URE A 704
05AC5SOFTWARETHR A:289 , ASN A:290 , VAL A:291 , THR A:330 , URE A:711 , URE A:723 , HOH A:860BINDING SITE FOR RESIDUE URE A 705
06AC6SOFTWAREGLU A:359 , GLY A:361 , GLN A:395BINDING SITE FOR RESIDUE URE A 706
07AC7SOFTWAREVAL A:349 , GLU A:626 , GLU A:629BINDING SITE FOR RESIDUE URE A 707
08AC8SOFTWARECYS A:429 , ASN A:430 , LYS A:435 , HIS A:470 , ARG A:474 , URE A:751BINDING SITE FOR RESIDUE URE A 708
09AC9SOFTWARETYR A:604 , PRO A:606BINDING SITE FOR RESIDUE URE A 709
10BC1SOFTWARELYS A:292 , LEU A:368 , THR A:371 , ASP A:372BINDING SITE FOR RESIDUE URE A 710
11BC2SOFTWAREARG A:329 , URE A:705 , URE A:723BINDING SITE FOR RESIDUE URE A 711
12BC3SOFTWAREGLU A:445 , ARG A:449BINDING SITE FOR RESIDUE URE A 712
13BC4SOFTWAREARG A:376 , GLN A:379 , TRP A:383 , HOH A:867BINDING SITE FOR RESIDUE URE A 713
14BC5SOFTWAREGLU A:310 , ARG A:486 , LEU A:487 , TYR A:489 , HOH A:877BINDING SITE FOR RESIDUE URE A 714
15BC6SOFTWARELEU A:487 , HIS A:488BINDING SITE FOR RESIDUE URE A 715
16BC7SOFTWAREARG A:469 , LYS A:508BINDING SITE FOR RESIDUE URE A 716
17BC8SOFTWAREARG A:528 , GLU A:529 , URE A:737 , HOH A:824 , HOH A:835 , HOH A:873BINDING SITE FOR RESIDUE URE A 717
18BC9SOFTWARETRP A:504 , PRO A:505 , GLY A:563 , VAL A:564BINDING SITE FOR RESIDUE URE A 718
19CC1SOFTWARECYS A:439 , GLY A:442 , GLY A:443 , ILE A:444 , GLU A:445 , HIS A:488 , URE A:749BINDING SITE FOR RESIDUE URE A 719
20CC2SOFTWAREARG A:582 , GLU A:620 , URE A:738 , HOH A:886BINDING SITE FOR RESIDUE URE A 720
21CC3SOFTWAREGLN A:266 , GLY A:268 , ALA A:269 , LYS A:270 , URE A:722BINDING SITE FOR RESIDUE URE A 721
22CC4SOFTWARELYS A:270 , ALA A:633 , GLU A:634 , GLY A:635 , URE A:721BINDING SITE FOR RESIDUE URE A 722
23CC5SOFTWARETHR A:289 , ASN A:290 , ARG A:329 , URE A:705 , URE A:711 , URE A:744BINDING SITE FOR RESIDUE URE A 723
24CC6SOFTWARESER A:374 , ARG A:376 , URE A:726BINDING SITE FOR RESIDUE URE A 724
25CC7SOFTWARELYS A:345 , TRP A:383 , ARG A:386BINDING SITE FOR RESIDUE URE A 725
26CC8SOFTWAREPRO A:373 , SER A:374 , GLN A:375 , URE A:724BINDING SITE FOR RESIDUE URE A 726
27CC9SOFTWAREARG A:342 , LYS A:345 , ASN A:380BINDING SITE FOR RESIDUE URE A 727
28DC1SOFTWARELYS A:354 , ASN A:387 , ASP A:390BINDING SITE FOR RESIDUE URE A 728
29DC2SOFTWARELYS A:394 , GLN A:395 , ASN A:431 , LYS A:433 , ASN A:434 , URE A:730 , HOH A:826BINDING SITE FOR RESIDUE URE A 729
30DC3SOFTWARELYS A:394 , ASN A:430 , ASN A:431 , TYR A:432 , LYS A:433 , URE A:729BINDING SITE FOR RESIDUE URE A 730
31DC4SOFTWAREGLY A:367 , GLY A:400 , THR A:404 , HOH A:812 , HOH A:868BINDING SITE FOR RESIDUE URE A 731
32DC5SOFTWARETHR A:371 , THR A:404 , GLN A:407 , HOH A:868BINDING SITE FOR RESIDUE URE A 732
33DC6SOFTWAREGLN A:407 , GLY A:410 , SER A:411BINDING SITE FOR RESIDUE URE A 733
34DC7SOFTWAREVAL A:441BINDING SITE FOR RESIDUE URE A 734
35DC8SOFTWAREPRO A:500 , SER A:502 , ILE A:507 , URE A:736 , URE A:754 , HOH A:853BINDING SITE FOR RESIDUE URE A 735
36DC9SOFTWAREPRO A:500 , PRO A:501 , ARG A:542 , URE A:735 , HOH A:883BINDING SITE FOR RESIDUE URE A 736
37EC1SOFTWAREARG A:528 , GLY A:531 , PRO A:534 , VAL A:589 , URE A:717 , HOH A:804BINDING SITE FOR RESIDUE URE A 737
38EC2SOFTWAREARG A:582 , ARG A:587 , GLU A:620 , GLN A:623 , URE A:720 , HOH A:854BINDING SITE FOR RESIDUE URE A 738
39EC3SOFTWAREPRO A:492 , GLN A:530 , GLY A:592 , LEU A:593 , ASN A:594 , URE A:740BINDING SITE FOR RESIDUE URE A 739
40EC4SOFTWAREARG A:591 , GLY A:592 , ASN A:594 , URE A:739BINDING SITE FOR RESIDUE URE A 740
41EC5SOFTWAREARG A:612 , GLU A:649 , GLY A:650 , TYR A:654BINDING SITE FOR RESIDUE URE A 741
42EC6SOFTWAREASP A:456 , ARG A:457 , GLU A:458 , ASP A:459BINDING SITE FOR RESIDUE URE A 742
43EC7SOFTWAREARG A:486 , TYR A:489 , GLY A:490 , LEU A:491 , PRO A:492BINDING SITE FOR RESIDUE URE A 743
44EC8SOFTWAREASP A:249 , LYS A:288 , THR A:289 , ASN A:290 , URE A:723BINDING SITE FOR RESIDUE URE A 744
45EC9SOFTWAREALA A:284 , SER A:318 , HOH A:827 , HOH A:863BINDING SITE FOR RESIDUE URE A 745
46FC1SOFTWARELEU A:244 , GLY A:245 , SER A:246 , LYS A:288BINDING SITE FOR RESIDUE URE A 746
47FC2SOFTWARETHR A:330 , URE A:704BINDING SITE FOR RESIDUE URE A 747
48FC3SOFTWAREGLN A:375 , LEU A:408 , SER A:411BINDING SITE FOR RESIDUE URE A 748
49FC4SOFTWAREILE A:444 , GLU A:477 , MET A:480 , ALA A:481 , ALA A:484 , URE A:719BINDING SITE FOR RESIDUE URE A 749
50FC5SOFTWARECYS A:429 , ASN A:430BINDING SITE FOR RESIDUE URE A 750
51FC6SOFTWAREARG A:469 , SER A:473 , ASN A:516 , URE A:708BINDING SITE FOR RESIDUE URE A 751
52FC7SOFTWARELYS A:496 , HIS A:499 , PRO A:500 , PRO A:501 , SER A:502 , ARG A:542BINDING SITE FOR RESIDUE URE A 752
53FC8SOFTWAREPRO A:501 , SER A:502 , HIS A:503BINDING SITE FOR RESIDUE URE A 753
54FC9SOFTWAREHIS A:503 , TRP A:504 , URE A:735BINDING SITE FOR RESIDUE URE A 754
55GC1SOFTWAREGLU A:310 , LEU A:313 , HOH A:877BINDING SITE FOR RESIDUE URE A 755
56GC2SOFTWAREGLN A:203BINDING SITE FOR RESIDUE URE A 756

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EVT)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Val A:248 -Asp A:249
2Pro A:500 -Pro A:501

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EVT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EVT)

(-) Exons   (0, 0)

(no "Exon" information available for 4EVT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:490
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4evta_ A: beta-Catenin                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4evt A 161 NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQREGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 662
                                   170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       562       572       582       592       602       612       622       632       642       652       662
                                                                                                                                                                                                                                                                                                                                                                                                                              549|                                                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                               562
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EVT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EVT)

(-) Gene Ontology  (265, 265)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CTNB1_MOUSE | Q02248: 1dow 1i7w 1i7x 1jpp 1m1e 1v18 2bct 3bct 3ouw 3oux 4ev8 4ev9 4eva 4evp 4ons

(-) Related Entries Specified in the PDB File

3bct 4ev8 4ev9 4eva 4evp