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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE CATENIN BETA-59 IN 5.6M UREA
 
Authors :  C. Wang, G. Y. Zhang
Date :  26 Apr 12  (Deposition) - 01 May 13  (Release) - 01 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  C  (1x)
Keywords :  Mouse Beta Catenin, Urea, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Wang, G. Y. Zhang
Crystal Structure Of Mouse Catenin Beta-59 In 5. 6M Urea
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CATENIN BETA-1
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 134-671
    Gene: CTNNB1, CATNB
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: BETA-CATENIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AC
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 72)

Asymmetric Unit (1, 72)
No.NameCountTypeFull Name
1URE72Ligand/IonUREA
Biological Unit 1 (1, 38)
No.NameCountTypeFull Name
1URE38Ligand/IonUREA
Biological Unit 2 (1, 34)
No.NameCountTypeFull Name
1URE34Ligand/IonUREA

(-) Sites  (72, 72)

Asymmetric Unit (72, 72)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:330 , TYR A:331 , HOH A:811 , HOH A:813 , THR C:330 , TYR C:331BINDING SITE FOR RESIDUE URE A 701
02AC2SOFTWARETHR A:332 , ASP A:372 , HOH A:970 , HOH A:1078BINDING SITE FOR RESIDUE URE A 702
03AC3SOFTWAREARG A:474 , LEU A:644 , HIS A:645 , SER A:646 , ALA A:652 , HOH A:1163BINDING SITE FOR RESIDUE URE A 703
04AC4SOFTWARELEU A:286 , ASN A:287 , LYS A:288 , TYR A:331 , HOH A:829 , HOH A:917 , HOH A:1101BINDING SITE FOR RESIDUE URE A 704
05AC5SOFTWARETHR A:289 , ASN A:290 , VAL A:291 , URE A:711 , HOH A:908 , THR C:330 , THR C:332BINDING SITE FOR RESIDUE URE A 705
06AC6SOFTWAREVAL A:358 , GLU A:359 , ALA A:360 , GLY A:361 , GLN A:395 , URE A:715BINDING SITE FOR RESIDUE URE A 706
07AC7SOFTWARELYS A:625 , GLU A:629BINDING SITE FOR RESIDUE URE A 707
08AC8SOFTWARECYS A:429 , ASN A:430 , LYS A:435 , HIS A:470 , SER A:473 , ARG A:474 , HOH A:930BINDING SITE FOR RESIDUE URE A 708
09AC9SOFTWARELEU A:244 , GLY A:245 , SER A:246 , LEU A:252 , LYS A:288BINDING SITE FOR RESIDUE URE A 709
10BC1SOFTWAREASP A:249 , LYS A:288 , THR A:289 , ASN A:290 , HOH A:1152BINDING SITE FOR RESIDUE URE A 710
11BC2SOFTWARETHR A:289 , ASN A:290 , URE A:705 , HOH A:979 , HOH A:1182 , ARG C:329BINDING SITE FOR RESIDUE URE A 711
12BC3SOFTWARESER A:250 , PHE A:253 , TYR A:254BINDING SITE FOR RESIDUE URE A 712
13BC4SOFTWARELEU A:313 , SER A:352BINDING SITE FOR RESIDUE URE A 713
14BC5SOFTWAREALA A:356 , GLU A:359 , HOH A:1198BINDING SITE FOR RESIDUE URE A 714
15BC6SOFTWAREGLN A:322 , GLU A:359 , URE A:706 , HOH A:1065BINDING SITE FOR RESIDUE URE A 715
16BC7SOFTWARELYS A:394 , GLN A:395 , ASN A:431 , LYS A:433 , ASN A:434 , URE A:723 , HOH A:918BINDING SITE FOR RESIDUE URE A 716
17BC8SOFTWARELEU A:368 , THR A:371 , ASP A:372 , HOH A:820 , HOH A:935 , HOH A:945 , LYS C:292 , URE C:701BINDING SITE FOR RESIDUE URE A 717
18BC9SOFTWAREGLU A:399 , MET A:437BINDING SITE FOR RESIDUE URE A 718
19CC1SOFTWARESER A:411 , HOH A:1196BINDING SITE FOR RESIDUE URE A 719
20CC2SOFTWAREPRO A:373 , SER A:374 , GLN A:375 , HOH A:824BINDING SITE FOR RESIDUE URE A 720
21CC3SOFTWARELYS A:345 , HOH A:905BINDING SITE FOR RESIDUE URE A 721
22CC4SOFTWARETHR A:371 , GLN A:407 , HOH A:1087BINDING SITE FOR RESIDUE URE A 722
23CC5SOFTWAREGLN A:395 , GLY A:397 , MET A:398 , GLU A:399 , ASN A:434 , MET A:437 , URE A:716BINDING SITE FOR RESIDUE URE A 723
24CC6SOFTWAREPRO A:501 , ARG A:542 , HOH A:814BINDING SITE FOR RESIDUE URE A 724
25CC7SOFTWARESER A:502 , ILE A:507 , URE A:726 , HOH A:895BINDING SITE FOR RESIDUE URE A 725
26CC8SOFTWAREHIS A:503 , TRP A:504 , URE A:725BINDING SITE FOR RESIDUE URE A 726
27CC9SOFTWAREGLU A:568 , GLU A:571 , URE A:728 , HOH A:881BINDING SITE FOR RESIDUE URE A 727
28DC1SOFTWAREARG A:515 , GLU A:571 , GLY A:575 , ARG A:612 , VAL A:613 , URE A:727 , HOH A:1009BINDING SITE FOR RESIDUE URE A 728
29DC2SOFTWARELEU A:519 , ARG A:582 , HOH A:1116 , HOH A:1143BINDING SITE FOR RESIDUE URE A 729
30DC3SOFTWAREARG A:582 , GLU A:620 , URE A:733BINDING SITE FOR RESIDUE URE A 730
31DC4SOFTWAREARG A:515 , HOH A:860BINDING SITE FOR RESIDUE URE A 731
32DC5SOFTWAREARG A:582 , ASP A:583 , VAL A:584 , URE A:734 , HOH A:882BINDING SITE FOR RESIDUE URE A 732
33DC6SOFTWAREARG A:582 , GLN A:623 , URE A:730 , URE A:734 , HOH A:882BINDING SITE FOR RESIDUE URE A 733
34DC7SOFTWAREPRO A:521 , HIS A:524 , ARG A:582 , URE A:732 , URE A:733 , HOH A:912 , HOH A:1113BINDING SITE FOR RESIDUE URE A 734
35DC8SOFTWARELEU A:603 , TYR A:604 , PRO A:639 , GLU A:642BINDING SITE FOR RESIDUE URE A 735
36DC9SOFTWARETYR A:604 , PRO A:606 , HOH A:1170BINDING SITE FOR RESIDUE URE A 736
37EC1SOFTWAREPRO A:606 , GLU A:608 , HOH A:835BINDING SITE FOR RESIDUE URE A 737
38EC2SOFTWAREVAL A:600 , TYR A:604 , GLU A:634 , GLY A:635BINDING SITE FOR RESIDUE URE A 738
39EC3SOFTWARETHR A:332 , URE A:717 , VAL C:291 , LYS C:292 , TYR C:333 , HOH C:859 , HOH C:903BINDING SITE FOR RESIDUE URE C 701
40EC4SOFTWAREARG A:329 , THR C:289 , ASN C:290 , URE C:706 , HOH C:942 , HOH C:1037 , HOH C:1068BINDING SITE FOR RESIDUE URE C 702
41EC5SOFTWARETHR C:332 , GLU C:334 , ASP C:372 , HOH C:809 , HOH C:901 , HOH C:1075BINDING SITE FOR RESIDUE URE C 703
42EC6SOFTWAREARG C:474 , LEU C:644 , HIS C:645 , SER C:646 , ALA C:652BINDING SITE FOR RESIDUE URE C 704
43EC7SOFTWARELEU C:286 , ASN C:287 , LYS C:288 , TYR C:331 , HOH C:808BINDING SITE FOR RESIDUE URE C 705
44EC8SOFTWARETHR A:330 , THR A:332 , THR C:289 , ASN C:290 , VAL C:291 , URE C:702 , HOH C:859BINDING SITE FOR RESIDUE URE C 706
45EC9SOFTWAREVAL C:358 , GLU C:359 , ALA C:360 , GLY C:361 , GLN C:395BINDING SITE FOR RESIDUE URE C 707
46FC1SOFTWAREVAL C:349 , GLU C:629 , HOH C:991BINDING SITE FOR RESIDUE URE C 708
47FC2SOFTWARECYS C:429 , ASN C:430 , LYS C:435 , HIS C:470 , SER C:473 , ARG C:474 , URE C:723 , HOH C:874 , HOH C:888BINDING SITE FOR RESIDUE URE C 709
48FC3SOFTWAREGLU C:163BINDING SITE FOR RESIDUE URE C 710
49FC4SOFTWAREHIS C:176 , GLY C:216 , HIS C:219 , ASN C:220 , TYR C:254BINDING SITE FOR RESIDUE URE C 711
50FC5SOFTWAREGLY C:245BINDING SITE FOR RESIDUE URE C 712
51FC6SOFTWAREGLN C:322 , ASN C:326 , ARG C:329 , HOH C:1011BINDING SITE FOR RESIDUE URE C 713
52FC7SOFTWAREVAL C:349 , SER C:351 , LYS C:354BINDING SITE FOR RESIDUE URE C 714
53FC8SOFTWARELYS A:292 , LEU C:368 , THR C:371 , ASP C:372 , HOH C:826 , HOH C:911 , HOH C:1019BINDING SITE FOR RESIDUE URE C 715
54FC9SOFTWAREGLN C:375 , SER C:411BINDING SITE FOR RESIDUE URE C 716
55GC1SOFTWAREPRO C:373 , SER C:374 , GLN C:375 , HOH C:833BINDING SITE FOR RESIDUE URE C 717
56GC2SOFTWAREMET C:437 , VAL C:441BINDING SITE FOR RESIDUE URE C 718
57GC3SOFTWAREPRO C:492 , LYS C:496 , GLN C:530 , GLN C:538 , HOH C:878BINDING SITE FOR RESIDUE URE C 719
58GC4SOFTWAREARG C:542 , HOH C:835BINDING SITE FOR RESIDUE URE C 720
59GC5SOFTWAREHIS C:503 , TRP C:504 , PRO C:505 , HOH C:1000 , HOH C:1067BINDING SITE FOR RESIDUE URE C 721
60GC6SOFTWAREARG C:469BINDING SITE FOR RESIDUE URE C 722
61GC7SOFTWAREARG C:474 , URE C:709 , HOH C:888BINDING SITE FOR RESIDUE URE C 723
62GC8SOFTWAREARG C:528 , GLU C:529 , HOH C:846 , HOH C:956 , HOH C:977BINDING SITE FOR RESIDUE URE C 724
63GC9SOFTWAREARG C:549BINDING SITE FOR RESIDUE URE C 725
64HC1SOFTWAREASP C:546 , ARG C:549BINDING SITE FOR RESIDUE URE C 726
65HC2SOFTWAREHIS C:544 , GLN C:548 , GLN C:601 , LEU C:602 , SER C:605 , HOH C:872BINDING SITE FOR RESIDUE URE C 727
66HC3SOFTWAREARG C:582 , ARG C:587 , GLU C:620 , GLN C:623 , HOH C:864BINDING SITE FOR RESIDUE URE C 728
67HC4SOFTWAREVAL C:584 , ARG C:591 , ASP C:624BINDING SITE FOR RESIDUE URE C 729
68HC5SOFTWAREPRO C:606 , ILE C:607 , GLU C:608 , HOH C:871BINDING SITE FOR RESIDUE URE C 730
69HC6SOFTWAREARG C:515 , GLY C:575 , HIS C:578 , ILE C:579 , ARG C:612 , HOH C:825BINDING SITE FOR RESIDUE URE C 731
70HC7SOFTWARELEU C:659 , PHE C:660 , MET C:662BINDING SITE FOR RESIDUE URE C 732
71HC8SOFTWAREGLU C:267 , LYS C:270 , ALA C:633 , GLU C:634 , HOH C:1054BINDING SITE FOR RESIDUE URE C 733
72HC9SOFTWAREALA C:656 , ALA C:657 , PHE C:660 , HOH C:967BINDING SITE FOR RESIDUE URE C 734

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EVA)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Pro A:500 -Pro A:501
2Pro C:500 -Pro C:501

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EVA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EVA)

(-) Exons   (0, 0)

(no "Exon" information available for 4EVA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:491
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4evaa_ A: beta-Catenin                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh........hhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eva A 160 LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQREGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 662
                                   169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549|      571       581       591       601       611       621       631       641       651       661 
                                                                                                                                                                                                                                                                                                                                                                                                                               549|                                                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                                562                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:488
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4evac_ C: beta-Catenin                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh........hhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhh.....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4eva C 163 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQREGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 662
                                   172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542      |564       574       584       594       604       614       624       634       644       654        
                                                                                                                                                                                                                                                                                                                                                                                                                            549|                                                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                             562
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EVA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EVA)

(-) Gene Ontology  (265, 265)

Asymmetric Unit(hide GO term definitions)

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  CTNB1_MOUSE | Q02248
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CTNB1_MOUSE | Q02248: 1dow 1i7w 1i7x 1jpp 1m1e 1v18 2bct 3bct 3ouw 3oux 4ev8 4ev9 4evp 4evt 4ons

(-) Related Entries Specified in the PDB File

3bct 4ev8 4ev9 4evp 4evt