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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF CONIFERYL ALCOHOL 9-O-METHYLTRANSFERASE FROM LINUM NODIFLORUM IN COMPLEX WITH CONIFERYL ALCOHOL 9-METHYL ETHER AND S -ADENOSYL-L-HOMOCYSTEINE
 
Authors :  S. Wolters, A. Heine, M. Petersen
Date :  26 Apr 12  (Deposition) - 01 May 13  (Release) - 15 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.02
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rossmann Fold, Dimer, Small Molecule O-Methyltransferase, Transferase, S-Adenosyl-L-Methionine, Coniferyl Alcohol, S -Adenosyl- L-Homocysteine (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Wolters, M. Neeb, A. Berim, J. Schulze Wischeler, M. Petersen, A. Heine
Structural Analysis Of Coniferyl Alcohol 9-O-Methyltransferase From Linum Nodiflorum Reveals A Novel Active-Site Environment.
Acta Crystallogr. , Sect. D V. 69 888 2013
PubMed-ID: 23633600  |  Reference-DOI: 10.1107/S0907444913002874

(-) Compounds

Molecule 1 - CONIFERYL ALCOHOL 9-O-METHYLTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CA9OMT
    Organism Scientific: LINUM NODIFLORUM
    Organism Taxid: 407264
    Synonym: S-ADENOSYL-L-METHIONINE-DEPENDENT CONIFERYL ALCOHOL 9-O- METHYLTRANSFERASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1C9M1Ligand/Ion2-METHOXY-4-[(1E)-3-METHOXYPROP-1-EN-1-YL]PHENOL
2GOL4Ligand/IonGLYCEROL
3N7I1Ligand/Ion4-[(1E)-3-HYDROXYPROP-1-EN-1-YL]-2-METHOXYPHENOL
4SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:162 , PHE A:175 , MET A:179 , SER A:183 , GLY A:208 , ASP A:231 , VAL A:235 , GLY A:251 , ASN A:252 , MET A:253 , LYS A:267 , TRP A:268 , ASP A:272 , C9M A:402 , HOH A:552 , HOH A:560 , HOH A:568 , HOH A:586 , HOH A:598 , HOH A:734BINDING SITE FOR RESIDUE SAH A 401
2AC2SOFTWARESER A:122 , TYR A:162 , TRP A:268 , ASP A:272 , LEU A:322 , LEU A:325 , PHE A:326 , SAH A:401 , PHE B:20BINDING SITE FOR RESIDUE C9M A 402
3AC3SOFTWAREGLU A:220 , THR A:221 , THR B:242BINDING SITE FOR RESIDUE GOL A 403
4AC4SOFTWAREPHE A:20 , SER B:122 , LEU B:127 , TRP B:268 , ASP B:272 , LEU B:325 , PHE B:326BINDING SITE FOR RESIDUE N7I B 401
5AC5SOFTWAREILE A:321 , HIS B:18 , ASN B:25 , HIS B:76 , LEU B:77 , GOL B:404 , HOH B:582BINDING SITE FOR RESIDUE GOL B 402
6AC6SOFTWAREASP A:11 , SER B:309 , CYS B:310 , GLY B:358 , GLY B:359 , LEU B:360 , ARG B:361 , HOH B:584 , HOH B:617BINDING SITE FOR RESIDUE GOL B 403
7AC7SOFTWAREHIS A:18 , HIS A:19 , GLY A:22 , ASN A:25 , HIS B:18 , GLY B:22 , ASN B:25 , GOL B:402BINDING SITE FOR RESIDUE GOL B 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EVI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EVI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EVI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EVI)

(-) Exons   (0, 0)

(no "Exon" information available for 4EVI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:360
                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4evia1 A:1-112 automated matches                                                                       d4evia2 A:113-368 automated matches                                                                                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhh...eehhhhhhh.......hhhhhhhhhhhhhh..eeee.....eeee...............hhhhhhh..hhhh.....hhhhh............hhhh......hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.........eeeee.....hhhhhhhhh....eeeeee..............eeeee............eeeee.......hhhhhhhhhhhhhh........eeeeee..........hhhhhhhhhhhhhhhhh.......hhhhhhhhhh....eeeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4evi A   1 MDAATAVELLDAQPQVWHHFLGYINSMTLQCALELDIADVIHRHGHPIPLNQLAAALEIPQTKAPFLSRLMRMLVHLGYFTQVITKLPSYWLAPLSRLLLKQNPYNARSLTFCSVHEHLVDPWRQMSAWLRTGKEDGKDTPNAFAFAHEGKKVYEVCSEDANFSQLFSEGMAGDSWLFSRALVSKCRDAFEGLSSLVDVGGGTGNTSKVIAETFPNIHCTVFDLPHVVSGPKQTHPNLDYESGNMFTDEIPHADAVLFKWVLCDWPDEPVLKMLKQCKKALTKNGVKGKLMIADHVLDHESCNDSNSMGTSLILDMLFMSFLEGSLRTEKQWAKLFAEAGFKDYKITPVGGLRVLIEVYP 368
                                    10        20        30        40        50        60        70        80     || 98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368
                                                                                                                86|                                                                                                                                                                                                                                                                                 
                                                                                                                 95                                                                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:354
                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4evib1 B:-7-112 automated matches                                                                          d4evib2 B:113-368 automated matches                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhh...eehhhhhhh.......hhhhhhhhhhhhhh..eeeee....eeeee...............hhhhhhh..hhhh.....hhhhh..........hhhh......hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhh....eeeee.....hhhhhhhhh....eeeeee.........eeeee............eeeee.......hhhhhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh...eeeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4evi B  -7 GLVMDAATAVELLDAQPQVWHHFLGYINSMTLQCALELDIADVIHRHGHPIPLNQLAAALEIPQTKAPFLSRLMRMLVHLGYFTQVITKPLPSYWLAPLSRLLLKQNPYNARSLTFCSVHEHLVDPWRQMSAWLRTGKGKDTPNAFAFAHEGKKVYEVCSEDANFSQLFSEGMAGDSWLFSRALVSKCRDAFEGLSSLVDVGGGTGNTSKVIAETFPNIHCTVFDLGPKQTHPNLDYESGNMFTDEIPHADAVLFKWVLCDWPDEPVLKMLKQCKKALTVKGKLMIADHVLDHESCNDSNSMGTSLILDMLFMSFLEGSLRTEKQWAKLFAEAGFKDYKITPVGGLRVLIEVYP 368
                              ||     7        17        27        37        47        57        67        77        87|      104       114       124       134       146       156       166       176       186       196       206       216       226     ||241       251       261       271       281       294       304       314       324       334       344       354       364    
                             -5|                                                                                    87|                                            142|                                                                                    232|                                                 290|                                                                          
                               1                                                                                     95                                             145                                                                                     238                                                  294
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EVI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EVI)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A6XNE6_9ROSI | A6XNE6: 4e70 4ems

(-) Related Entries Specified in the PDB File

4e70 THE SAME PROTEIN COMPLEXED WITH CONIFERYL ALCOHOL
4ems THE SAME PROTEIN NATIVE STRUCTURE