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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF CONIFERYL ALCOHOL 9-O-METHYLTRANSFERASE FROM LINUM NODIFLORUM IN COMPLEX WITH CONIFERYL ALCOHOL
 
Authors :  S. Wolters, A. Heine, M. Petersen
Date :  16 Mar 12  (Deposition) - 01 May 13  (Release) - 15 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.61
Chains :  Asym./Biol. Unit :  A,B
Keywords :  S-Adenosyl-L-Methionine, Small Molecule O-Methyltransferase, Coniferyl Alcohol, Transferase, Dimer, Rossmann Fold (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Wolters, M. Neeb, A. Berim, J. Schulze Wischeler, M. Petersen, A. Heine
Structural Analysis Of Coniferyl Alcohol 9-O-Methyltransferase From Linum Nodiflorum Reveals A Novel Active-Site Environment.
Acta Crystallogr. , Sect. D V. 69 888 2013
PubMed-ID: 23633600  |  Reference-DOI: 10.1107/S0907444913002874

(-) Compounds

Molecule 1 - CONIFERYL ALCOHOL 9-O-METHYLTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CA9OMT
    Organism Scientific: LINUM NODIFLORUM
    Organism Taxid: 407264
    Synonym: S-ADENOSYL-L-METHIONINE-DEPENDENT CONIFERYL ALCOHOL 9-O- METHYLTRANSFERASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2N7I2Ligand/Ion4-[(1E)-3-HYDROXYPROP-1-EN-1-YL]-2-METHOXYPHENOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:18 , HIS A:19 , HOH A:576 , HOH A:607 , HOH A:639 , HOH A:786 , HIS B:1018 , ASN B:1025 , LEU B:1077BINDING SITE FOR RESIDUE GOL A 401
2AC2SOFTWAREHIS A:18 , ASN A:25 , HOH A:578 , HOH A:594 , HOH A:786 , HOH B:1553BINDING SITE FOR RESIDUE GOL A 402
3AC3SOFTWARELEU A:118 , CYS A:121 , SER A:122 , LEU A:127 , TRP A:268 , ASP A:272 , LEU A:325 , PHE A:326 , HOH A:819 , PHE B:1020BINDING SITE FOR RESIDUE N7I A 403
4AC4SOFTWAREASP A:11 , SER B:1309 , SER B:1315 , GLY B:1359 , LEU B:1360 , HOH B:1580 , HOH B:1611BINDING SITE FOR RESIDUE GOL B 1401
5AC5SOFTWAREPHE A:20 , CYS B:1121 , SER B:1122 , TRP B:1268 , ASP B:1272 , LEU B:1325BINDING SITE FOR RESIDUE N7I B 1402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E70)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4E70)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E70)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E70)

(-) Exons   (0, 0)

(no "Exon" information available for 4E70)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:359
                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4e70a1 A:1-112 automated matches                                                                         d4e70a2 A:113-368 automated matches                                                                                                                                                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhh...eehhhhhhh.......hhhhhhhhhhhhhh..eeee.......eeee...............hhhhhhh..hhhh.....hhhhh............hhhh......hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.........eeeee.....hhhhhhhhh....eeeeee..............eeeee............eeeee.......hhhhhhhhhhhhhh.....eeeeee..........hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh...eeeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4e70 A    1 MDAATAVELLDAQPQVWHHFLGYINSMTLQCALELDIADVIHRHGHPIPLNQLAAALEIPQTKAPFLSRLMRMLVHLGYFTQVITKPVLPSYWLAPLSRLLLKQNPYNARSLTFCSVHEHLVDPWRQMSAWLRTGKEDGKDTPNAFAFAHEGKKVYEVCSEDANFSQLFSEGMAGDSWLFSRALVSKCRDAFEGLSSLVDVGGGTGNTSKVIAETFPNIHCTVFDLPHVVSGPKQTHPNLDYESGNMFTDEIPHADAVLFKWVLCDWPDEPVLKMLKQCKKALTKKGKLMIADHVLDHESCNDSNSMGTSLILDMLFMSFLEGSLRTEKQWAKLFAEAGFKDYKITPVGGLRVLIEVYP  368
                                    10        20        30        40        50        60        70        80      ||96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286    || 299       309       319       329       339       349       359         
                                                                                                                 87|                                                                                                                                                                                                  291|                                                                         
                                                                                                                  94                                                                                                                                                                                                   295                                                                         


Chain B from PDB  Type:PROTEIN  Length:356
                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4e70b1 B:993-1112 automated matches                                                                           d4e70b2 B:1113-1368 automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhh...eehhhhhhh.......hhhhhhhhhhhhhh..eeee.......eeee...............hhhhhhh..hhhh.....hhhhh.........hhhh......hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.........eeeee.....hhhhhhhhh....eeeeee..........eeeee............eeeee.......hhhhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh...eeeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4e70 B  993 GLVPHMDAATAVELLDAQPQVWHHFLGYINSMTLQCALELDIADVIHRHGHPIPLNQLAAALEIPQTKAPFLSRLMRMLVHLGYFTQVITKPVLPSYWLAPLSRLLLKQNPYNARSLTFCSVHEHLVDPWRQMSAWLRTGKKDTPNAFAFAHEGKKVYEVCSEDANFSQLFSEGMAGDSWLFSRALVSKCRDAFEGLSSLVDVGGGTGNTSKVIAETFPNIHCTVFDLPGPKQTHPNLDYESGNMFTDEIPHADAVLFKWVLCDWPDEPVLKMLKQCKKALTKGKLMIADHVLDHESCNDSNSMGTSLILDMLFMSFLEGSLRTEKQWAKLFAEAGFKDYKITPVGGLRVLIEVYP 1368
                               || 1005      1015      1025      1035      1045      1055      1065      1075      1085 ||   1101      1111      1121      1131      1141||    1154      1164      1174      1184      1194      1204      1214      1224      1238      1248      1258      1268      1278      1288 ||   1302      1312      1322      1332      1342      1352      1362      
                             996|                                                                                   1087|                                            1142|                                                                                   1233|                                                1290|                                                                         
                             1000                                                                                    1094                                             1146                                                                                    1238                                                 1295
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E70)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E70)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  4e70
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        A6XNE6_9ROSI | A6XNE6: 4ems 4evi

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