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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF CONIFERYL ALCOHOL 9-O-METHYLTRANSFERASE FROM LINUM NODIFLORUM
 
Authors :  S. Wolters, A. Heine, M. Petersen
Date :  12 Apr 12  (Deposition) - 01 May 13  (Release) - 15 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rossmann Fold, Dimer, Transferase, Small Molecule O- Methyltransferase, S-Adenosyl-L-Methionine, Coniferyl Alcohol, Phenylpropanoid, Methylation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Wolters, M. Neeb, A. Berim, J. Schulze Wischeler, M. Petersen, A. Heine
Structural Analysis Of Coniferyl Alcohol 9-O-Methyltransferase From Linum Nodiflorum Reveals A Novel Active-Site Environment.
Acta Crystallogr. , Sect. D V. 69 888 2013
PubMed-ID: 23633600  |  Reference-DOI: 10.1107/S0907444913002874

(-) Compounds

Molecule 1 - CONIFERYL ALCOHOL 9-O-METHYLTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CA9OMT
    Organism Scientific: LINUM NODIFLORUM
    Organism Taxid: 407264
    Synonym: S-ADENOSYL-L-METHIONINE-DEPENDENT CONIFERYL ALCOHOL 9-O- METHYLTRANSFERASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:118 , SER A:122 , TRP A:268 , LEU A:325BINDING SITE FOR RESIDUE GOL A 401
2AC2SOFTWAREHIS A:18 , ASN A:25 , HOH A:545 , HOH A:651 , HIS B:18 , GOL B:401 , HOH B:714BINDING SITE FOR RESIDUE GOL A 402
3AC3SOFTWAREHIS A:18 , HIS A:19 , GOL A:402 , HOH A:521 , HOH A:743 , HIS B:18 , ASN B:25 , HIS B:76 , HOH B:619 , HOH B:721BINDING SITE FOR RESIDUE GOL B 401
4AC4SOFTWAREASP A:11 , SER B:309 , SER B:315 , GLY B:358 , GLY B:359 , LEU B:360 , HOH B:602 , HOH B:608BINDING SITE FOR RESIDUE GOL B 402
5AC5SOFTWARELEU B:118 , SER B:122 , TRP B:268 , LEU B:325BINDING SITE FOR RESIDUE GOL B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EMS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EMS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EMS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EMS)

(-) Exons   (0, 0)

(no "Exon" information available for 4EMS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4emsa1 A:1-112 automated matches                                                                        d4emsa2 A:113-368 automated matches                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhh...eehhhhhhh.......hhhhhhhhhhhhhh..eeee......eeee...............hhhhhhh..hhhh.....hhhhh............hhhh......hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.........eeeee.....hhhhhhhhh....eeeeee..............eeeee............eeeee.......hhhhhhhhhhhhhh.....eeeeee..........hhhhhhhhhhhhhhhhh.......hhhhhhhhhh....eeeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ems A   1 MDAATAVELLDAQPQVWHHFLGYINSMTLQCALELDIADVIHRHGHPIPLNQLAAALEIPQTKAPFLSRLMRMLVHLGYFTQVITKPLPSYWLAPLSRLLLKQNPYNARSLTFCSVHEHLVDPWRQMSAWLRTGKEDGKDTPNAFAFAHEGKKVYEVCSEDANFSQLFSEGMAGDSWLFSRALVSKCRDAFEGLSSLVDVGGGTGNTSKVIAETFPNIHCTVFDLPHVVSGPKQTHPNLDYESGNMFTDEIPHADAVLFKWVLCDWPDEPVLKMLKQCKKALTKKGKLMIADHVLDHESCNDSNSMGTSLILDMLFMSFLEGSLRTEKQWAKLFAEAGFKDYKITPVGGLRVLIEVYP 368
                                    10        20        30        40        50        60        70        80      ||97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287   ||  300       310       320       330       340       350       360        
                                                                                                                 87|                                                                                                                                                                                                 291|                                                                         
                                                                                                                  95                                                                                                                                                                                                  295                                                                         


Chain B from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4emsb1 B:-7-112 automated matches                                                                              d4emsb2 B:113-368 automated matches                                                                                                                                                                                                                    SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhh...eehhhhhhh.......hhhhhhhhhhhhhh..eeeee......eeeee...............hhhhhhh..hhhh.....hhhhh..........hhhh......hhhhhhh.hhhhhh...hhhhhhhhhhhhhhhh.........eeeee.....hhhhhhhhh....eeeeee..........eeeee............eeeee.......hhhhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh...eeeeeeee..eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ems B  -7 GLVPHMDAATAVELLDAQPQVWHHFLGYINSMTLQCALELDIADVIHRHGHPIPLNQLAAALEIPQTKAPFLSRLMRMLVHLGYFTQVITKPEVLPSYWLAPLSRLLLKQNPYNARSLTFCSVHEHLVDPWRQMSAWLRTGKGKDTPNAFAFAHEGKKVYEVCSEDANFSQLFSEGMAGDSWLFSRALVSKCRDAFEGLSSLVDVGGGTGNTSKVIAETFPNIHCTVFDLPGPKQTHPNLDYESGNMFTDEIPHADAVLFKWVLCDWPDEPVLKMLKQCKKALTKGKLMIADHVLDHESCNDSNSMGTSLILDMLFMSFLEGSLRTEKQWAKLFAEAGFKDYKITPVGGLRVLIEVYP 368
                               ||    5        15        25        35        45        55        65        75        85  ||   100       110       120       130       140 ||    152       162       172       182       192       202       212       222       232||     246       256       266       276       286   ||  300       310       320       330       340       350       360        
                              -4|                                                                                      88|                                             142|                                                                                     233|                                                 290|                                                                         
                                0                                                                                       94                                              145                                                                                      238                                                  295
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EMS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EMS)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A6XNE6_9ROSI | A6XNE6: 4e70 4evi

(-) Related Entries Specified in the PDB File

4e70 THE SAME PROTEIN COMPLEXED WITH CONIFERYL ALCOHOL.