4EKD - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   STRUCTURE OF HUMAN REGULATOR OF G PROTEIN SIGNALING 2 (RGS2) IN COMPLEX WITH MURINE GALPHA-Q(R183C)

Authors :   J. J. G. Tesmer, M. R. Nance

Date :   09 Apr 12 (Deposition) - 30 Jan 13 (Release) - 28 Aug 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.71

Chains :   Asym./Biol. Unit : A,B

Keywords :   Gtp-Binding, Regulator Of G Protein Signaling, Homology Domain, Gtpase Activation, Signaling Protein-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. R. Nance, B. Kreutz, V. M. Tesmer, R. Sterne-Marr, T. Kozasa, J. J. Tesmer
Structural And Functional Analysis Of The Regulator Of G Protein Signaling 2-G Alpha Q Complex.
Structure V. 21 438 2013
PubMed-ID: 23434405 | Reference-DOI: 10.1016/J.STR.2012.12.016

Molecule 1 - GUANINE NUCLEOTIDE-BINDING PROTEIN G(Q) SUBUNIT ALPHA
	Chains	:	A
	EC Number	:	3.6.5.1
	Engineered	:	YES
	Expression System	:	TRICHOPLUSIA NI
	Expression System Taxid	:	7111
	Fragment	:	UNP RESIDUES 18-359
	Gene	:	GNAQ
	Mutation	:	YES
	Organism Common	:	MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Synonym	:	GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-Q

Molecule 2 - REGULATOR OF G-PROTEIN SIGNALING 2
	Chains	:	B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	RGS DOMAIN, UNP RESIDUES 72-203
	Gene	:	RGS2, G0S8, GIG31
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	RGS2, CELL GROWTH-INHIBITING GENE 31 PROTEIN, G0/G1 SWITCH REGULATORY PROTEIN 8

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (6, 8)

No.	Name	Count	Type	Full Name
1	ALF	1	Ligand/Ion	TETRAFLUOROALUMINATE ION
2	CL	2	Ligand/Ion	CHLORIDE ION
3	CO	2	Ligand/Ion	COBALT (II) ION
4	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
5	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6	MG	1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:49 , SER A:50 , GLY A:51 , LYS A:52 , SER A:53 , THR A:54 , SER A:156 , LEU A:180 , ARG A:181 , VAL A:182 , CYS A:183 , ASN A:274 , LYS A:275 , ASP A:277 , LEU A:278 , CYS A:330 , ALA A:331 , THR A:332 , ALF A:402 , MG A:407 , HOH A:502 , HOH A:503	BINDING SITE FOR RESIDUE GDP A 401
2	AC2	SOFTWARE	GLY A:48 , GLU A:49 , LYS A:52 , SER A:53 , PRO A:185 , THR A:186 , GLY A:208 , GLN A:209 , GDP A:401 , MG A:407 , HOH A:501 , HOH A:502 , HOH A:503	BINDING SITE FOR RESIDUE ALF A 402
3	AC3	SOFTWARE	HIS A:105 , HIS A:109 , CL A:404 , CL A:405	BINDING SITE FOR RESIDUE CO A 403
4	AC4	SOFTWARE	HIS A:109 , CO A:403 , CL A:405	BINDING SITE FOR RESIDUE CL A 404
5	AC5	SOFTWARE	HIS A:105 , HIS A:109 , CO A:403 , CL A:404	BINDING SITE FOR RESIDUE CL A 405
6	AC6	SOFTWARE	ASP A:319 , ASP A:321 , LYS B:142	BINDING SITE FOR RESIDUE CO A 406
7	AC7	SOFTWARE	SER A:53 , THR A:186 , GDP A:401 , ALF A:402 , HOH A:502 , HOH A:503	BINDING SITE FOR RESIDUE MG A 407
8	AC8	SOFTWARE	GLU A:119 , LYS A:120 , LYS A:133 , ASP A:165 , ASP B:85 , TRP B:113 , LYS B:120 , GLN B:174 , TYR B:178	BINDING SITE FOR RESIDUE MES B 301

(no "SS Bond" information available for 4EKD)

(no "Cis Peptide Bond" information available for 4EKD)

(no "SAP(SNP)/Variant" information available for 4EKD)

(no "PROSITE Motif" information available for 4EKD)

(no "Exon" information available for 4EKD)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee.....hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.....hhhhhhhh......eeeeeee....eeeeeee..hhhhhhhhhhhh....eeeeeee.hhhhh........hhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhh...hhhhh.........hhhhhhhhhhhhhhh.........eeee....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ekd A  37 RRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEKVSAFDVPDYAAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVCVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK 354
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346

Chain B from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains d4ekdb_ B: automated matches                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh..........hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ekd B  69 FGSPSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDLCK 200
                                    78        88        98       108       118       128       138       148       158       168       178       188       198

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Regulator of G-protein signaling, RGS (52)

Superfamily: Regulator of G-protein signaling, RGS (52)

Family: Regulator of G-protein signaling, RGS (27)

Protein domain: automated matches (6)

Human (Homo sapiens) [TaxId: 9606] (3)

d4ekdb_

(no "CATH Domain" information available for 4EKD)

(no "Pfam Domain" information available for 4EKD)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		ALF	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GDP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MES	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4ekd)

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format \| Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	4ekd
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	GNAQ_MOUSE \| P21279
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	RGS2_HUMAN \| P41220
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	3.6.5.1
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	GNAQ_MOUSE \| P21279
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	RGS2_HUMAN \| P41220
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	GNAQ_MOUSE \| P21279	:	2bcj 2rgn 3ah8 3ohm 4ekc 4gnk 4qj3 4qj4 4qj5 5do9
	RGS2_HUMAN \| P41220	:	2af0 2v4z 4ekc

1agr	RGS4 IN COMPLEX WITH GALPHA-I1
2af0	STRUCTURE OF RGS2
2bcj	GALPHA-Q IN COMPLEX WITH RGS HOMOLOGY DOMAIN OF G PROTEIN- COUPLED RECEPTOR KINASE 2
2v4z	RGS2 TRIPLE MUTANT IN COMPLEX WITH GALPHA-I3
4ekc

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (67, 73)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File