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4E47
Asym. Unit
Info
Asym.Unit (355 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (91 KB)
Biol.Unit 3 (89 KB)
Biol.Unit 4 (92 KB)
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(1)
Title
:
SET7/9 IN COMPLEX WITH INHIBITOR (R)-(3-(3-CYANOPHENYL)-1-OXO-1-(PYRROLIDIN-1-YL)PROPAN-2-YL)-1,2,3,4-TETRAHYDROISOQUINOLINE-6-SULFONAMIDE AND S-ADENOSYLMETHIONINE
Authors
:
J. R. Walker, H. Ouyang, A. Dong, P. Fish, A. Cook, D. Barsyte, M. Vedadi, J. Tatlock, D. Owen, M. Bunnage, C. Bountra, J. Weigelt, A. M. Edwards, C. H. Arrowsmith, P. J. Brown, Structural Genomics Consortium (Sg
Date
:
12 Mar 12 (Deposition) - 28 Mar 12 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Ternary Complex, Set Domain, Methyltransferase, Inhibitor, S- Adenosylmethionine, Chromatin Regulator, Chromosomal Protein, Nucleus, Transcription, Transcription Regulation, Transferase, Structural Genomics Consortium, Sgc, Transferase-Transferase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. R. Walker, H. Ouyang, A. Dong, P. Fish, A. Cook, D. Barsyte, M. Vedadi J. Tatlock, D. Owen, M. Bunnage, C. Bountra, A. M. Edwards, C. H. Arrowsmith, P. J. Brown, Structural Genomics Consortium (Sgc)
Setd7 In Complex With Inhibitor And Sam
To Be Published
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close entry info
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: (R)-(3-(3-CYANOPHENYL)-1-OXO-1-(PY... (0N6a)
1b: (R)-(3-(3-CYANOPHENYL)-1-OXO-1-(PY... (0N6b)
1c: (R)-(3-(3-CYANOPHENYL)-1-OXO-1-(PY... (0N6c)
1d: (R)-(3-(3-CYANOPHENYL)-1-OXO-1-(PY... (0N6d)
2a: BETA-MERCAPTOETHANOL (BMEa)
3a: S-ADENOSYLMETHIONINE (SAMa)
3b: S-ADENOSYLMETHIONINE (SAMb)
3c: S-ADENOSYLMETHIONINE (SAMc)
3d: S-ADENOSYLMETHIONINE (SAMd)
4a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0N6
4
Ligand/Ion
(R)-(3-(3-CYANOPHENYL)-1-OXO-1-(PYRROLIDIN-1-YL)PROPAN-2-YL)-1,2,3,4-TETRAHYDROISOQUINOLINE-6-SULFONAMIDE
2
BME
1
Ligand/Ion
BETA-MERCAPTOETHANOL
3
SAM
4
Ligand/Ion
S-ADENOSYLMETHIONINE
4
SO4
1
Ligand/Ion
SULFATE ION
[
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]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:226 , GLU A:228 , GLY A:264 , ASN A:265 , HIS A:293 , LYS A:294 , ALA A:295 , ASN A:296 , HIS A:297 , TYR A:335 , TRP A:352 , HOH A:522 , HOH A:530 , HOH A:597 , HOH A:598 , HOH A:603 , HOH A:625 , HOH A:632
BINDING SITE FOR RESIDUE SAM A 401
02
AC2
SOFTWARE
TYR A:245 , HIS A:252 , ASP A:256 , ASN A:263 , GLY A:264 , THR A:266 , LEU A:267 , SER A:268 , TYR A:305 , TYR A:335 , GLY A:336 , TYR A:337 , HOH A:513
BINDING SITE FOR RESIDUE 0N6 A 402
03
AC3
SOFTWARE
CYS A:200 , SER A:202 , HOH A:506 , GLU D:351 , GLN D:354
BINDING SITE FOR RESIDUE BME A 403
04
AC4
SOFTWARE
TYR A:122 , HOH A:512 , HOH A:741 , TRP B:120 , TYR B:122
BINDING SITE FOR RESIDUE SO4 A 404
05
AC5
SOFTWARE
ALA B:226 , GLU B:228 , GLY B:264 , ASN B:265 , HIS B:293 , LYS B:294 , ALA B:295 , ASN B:296 , HIS B:297 , TYR B:335 , TRP B:352 , HOH B:930 , HOH B:969 , HOH B:972 , HOH B:985 , HOH B:988 , HOH B:1014 , HOH B:1038 , HOH B:1058
BINDING SITE FOR RESIDUE SAM B 800
06
AC6
SOFTWARE
TYR B:245 , HIS B:252 , ASP B:256 , ASN B:263 , GLY B:264 , THR B:266 , LEU B:267 , SER B:268 , TYR B:305 , TYR B:335 , GLY B:336 , TYR B:337 , HOH B:966
BINDING SITE FOR RESIDUE 0N6 B 801
07
AC7
SOFTWARE
ALA C:226 , GLU C:228 , GLY C:264 , ASN C:265 , HIS C:293 , LYS C:294 , ALA C:295 , ASN C:296 , HIS C:297 , TYR C:335 , TRP C:352 , HOH C:937 , HOH C:949 , HOH C:962 , HOH C:977 , HOH C:1015 , HOH C:1056 , HOH C:1057 , HOH C:1071
BINDING SITE FOR RESIDUE SAM C 800
08
AC8
SOFTWARE
TYR C:245 , HIS C:252 , ASP C:256 , TRP C:260 , ASN C:263 , GLY C:264 , THR C:266 , LEU C:267 , SER C:268 , TYR C:305 , TYR C:335 , GLY C:336 , TYR C:337 , HIS C:339 , HOH C:989
BINDING SITE FOR RESIDUE 0N6 C 801
09
AC9
SOFTWARE
ALA D:226 , GLU D:228 , GLY D:264 , ASN D:265 , HIS D:293 , LYS D:294 , ALA D:295 , ASN D:296 , HIS D:297 , TYR D:335 , TRP D:352 , HOH D:910 , HOH D:964 , HOH D:1011 , HOH D:1055 , HOH D:1059 , HOH D:1071
BINDING SITE FOR RESIDUE SAM D 800
10
BC1
SOFTWARE
TYR D:245 , HIS D:252 , ASP D:256 , TRP D:260 , ASN D:263 , GLY D:264 , THR D:266 , LEU D:267 , SER D:268 , TYR D:305 , TYR D:335 , GLY D:336 , TYR D:337 , HOH D:927
BINDING SITE FOR RESIDUE 0N6 D 801
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SET (A:214-336,B:214-336,C:214-336,D:21...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SET
PS50280
SET domain profile.
SETD7_HUMAN
214-336
4
A:214-336
B:214-336
C:214-336
D:214-336
[
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Exons
(6, 24)
Info
All Exons
Exon 1.4a (A:116-124 | B:116-124 | C:117-124 ...)
Exon 1.5 (A:125-188 | B:125-188 | C:125-188 ...)
Exon 1.6 (A:188-215 | B:188-215 | C:188-215 ...)
Exon 1.7b (A:215-254 | B:215-254 | C:215-254 ...)
Exon 1.8 (A:255-307 | B:255-307 | C:255-307 ...)
Exon 1.9 (A:307-366 (gaps) | B:307-366 (gaps...)
View:
Select:
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All Exon Boundaries
1: Boundary 1.3/1.4a
2: Boundary 1.4a/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7b
5: Boundary 1.7b/1.8
6: Boundary 1.8/1.9
7: Boundary 1.9/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000274031
1a
ENSE00001831410
chr4:
140477928-140477252
677
SETD7_HUMAN
1-14
14
0
-
-
1.3
ENST00000274031
3
ENSE00001613109
chr4:
140468203-140468074
130
SETD7_HUMAN
14-57
44
0
-
-
1.4a
ENST00000274031
4a
ENSE00001643989
chr4:
140454520-140454319
202
SETD7_HUMAN
57-124
68
4
A:116-124
B:116-124
C:117-124
D:116-124
9
9
8
9
1.5
ENST00000274031
5
ENSE00001671090
chr4:
140450374-140450185
190
SETD7_HUMAN
125-188
64
4
A:125-188
B:125-188
C:125-188
D:125-188
64
64
64
64
1.6
ENST00000274031
6
ENSE00001802218
chr4:
140444589-140444508
82
SETD7_HUMAN
188-215
28
4
A:188-215
B:188-215
C:188-215
D:188-215
28
28
28
28
1.7b
ENST00000274031
7b
ENSE00001663487
chr4:
140441548-140441431
118
SETD7_HUMAN
215-254
40
4
A:215-254
B:215-254
C:215-254
D:215-254
40
40
40
40
1.8
ENST00000274031
8
ENSE00001734092
chr4:
140439196-140439039
158
SETD7_HUMAN
255-307
53
4
A:255-307
B:255-307
C:255-307
D:255-307
53
53
53
53
1.9
ENST00000274031
9
ENSE00001192306
chr4:
140432997-140427190
5808
SETD7_HUMAN
307-366
60
4
A:307-366 (gaps)
B:307-366 (gaps)
C:307-366 (gaps)
D:307-366 (gaps)
60
60
60
60
[
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]
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d4e47a2 (A:194-368)
1b: SCOP_d4e47b2 (B:194-369)
1c: SCOP_d4e47c2 (C:194-369)
1d: SCOP_d4e47d2 (D:194-369)
2a: SCOP_d4e47a1 (A:116-193)
2b: SCOP_d4e47b1 (B:116-193)
2c: SCOP_d4e47c1 (C:117-193)
2d: SCOP_d4e47d1 (D:116-193)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-clip
(280)
Superfamily
:
SET domain
(44)
Family
:
Histone lysine methyltransferases
(21)
Protein domain
:
Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
(17)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d4e47a2
A:194-368
1b
d4e47b2
B:194-369
1c
d4e47c2
C:194-369
1d
d4e47d2
D:194-369
Fold
:
open-sided beta-meander
(34)
Superfamily
:
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
(17)
Family
:
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
(17)
Protein domain
:
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
(17)
Human (Homo sapiens) [TaxId: 9606]
(17)
2a
d4e47a1
A:116-193
2b
d4e47b1
B:116-193
2c
d4e47c1
C:117-193
2d
d4e47d1
D:116-193
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asym.Unit (355 KB)
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