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(-) Description

Title :  CRYSTAL STRUCTURE OF RED KIDNEY BEAN PURPLE ACID PHOSPHATASE IN COMPLEX WITH MAYBRIDGE FRAGMENT CC24201
 
Authors :  D. Feder, W. M. Hussein, D. J. Clayton, M. Kan, G. Schenk, R. P. Mcgeary, L
Date :  20 Feb 12  (Deposition) - 19 Sep 12  (Release) - 02 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A,B,C,D  (1x)
Keywords :  Phosphatase, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Feder, W. M. Hussein, D. J. Clayton, M. W. Kan, G. Schenk, R. P. Mcgeary, L. W. Guddat
Identification Of Purple Acid Phosphatase Inhibitors By Fragment-Based Screening: Promising New Leads For Osteoporosis Therapeutics.
Chem. Biol. Drug Des. V. 80 665 2012
PubMed-ID: 22943065  |  Reference-DOI: 10.1111/CBDD.12001

(-) Compounds

Molecule 1 - PURPLE ACID PHOSPHATASE
    Chains: A, B, C, D
    EC Number: 3.1.3.2
    Engineered: YES
    Fragment: UNP RESIDUES 34-459
    Gene: PAP
    Organism Common: FRENCH BEAN,KIDNEY BEAN,STRING BEAN
    Organism Scientific: PHASEOLUS VULGARIS
    Organism Taxid: 3885

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABCD
Biological Unit 2 (1x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (9, 74)

Asymmetric Unit (9, 74)
No.NameCountTypeFull Name
10LO1Ligand/Ion5-PHENYLPYRIDINE-3-CARBOXYLIC ACID
2ACT2Ligand/IonACETATE ION
3EDO13Ligand/Ion1,2-ETHANEDIOL
4FE4Ligand/IonFE (III) ION
5FUC9Ligand/IonALPHA-L-FUCOSE
6GOL7Ligand/IonGLYCEROL
7NAG23Ligand/IonN-ACETYL-D-GLUCOSAMINE
8SO411Ligand/IonSULFATE ION
9ZN4Ligand/IonZINC ION
Biological Unit 1 (7, 66)
No.NameCountTypeFull Name
10LO1Ligand/Ion5-PHENYLPYRIDINE-3-CARBOXYLIC ACID
2ACT2Ligand/IonACETATE ION
3EDO13Ligand/Ion1,2-ETHANEDIOL
4FE-1Ligand/IonFE (III) ION
5FUC9Ligand/IonALPHA-L-FUCOSE
6GOL7Ligand/IonGLYCEROL
7NAG23Ligand/IonN-ACETYL-D-GLUCOSAMINE
8SO411Ligand/IonSULFATE ION
9ZN-1Ligand/IonZINC ION
Biological Unit 2 (7, 66)
No.NameCountTypeFull Name
10LO1Ligand/Ion5-PHENYLPYRIDINE-3-CARBOXYLIC ACID
2ACT2Ligand/IonACETATE ION
3EDO13Ligand/Ion1,2-ETHANEDIOL
4FE-1Ligand/IonFE (III) ION
5FUC9Ligand/IonALPHA-L-FUCOSE
6GOL7Ligand/IonGLYCEROL
7NAG23Ligand/IonN-ACETYL-D-GLUCOSAMINE
8SO411Ligand/IonSULFATE ION
9ZN-1Ligand/IonZINC ION

(-) Sites  (73, 73)

Asymmetric Unit (73, 73)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:135 , ASP A:164 , ASN A:201 , HIS A:286 , HIS A:323 , FE A:502 , 0LO A:503BINDING SITE FOR RESIDUE ZN A 501
02AC2SOFTWAREASP A:135 , ASP A:164 , TYR A:167 , HIS A:325 , ZN A:501 , 0LO A:503BINDING SITE FOR RESIDUE FE A 502
03AC3SOFTWAREASP A:164 , ASN A:201 , HIS A:202 , HIS A:295 , HIS A:296 , HIS A:323 , HIS A:325 , TYR A:365 , ZN A:501 , FE A:502 , HOH A:944 , ARG D:258BINDING SITE FOR RESIDUE 0LO A 503
04AC4SOFTWAREARG A:304 , THR A:305 , ASN A:335 , ILE A:336 , ALA A:337 , TYR A:338 , HOH A:601 , HOH A:758 , MET D:298 , HOH D:602 , HOH D:676BINDING SITE FOR RESIDUE GOL A 504
05AC5SOFTWAREASP A:16 , ASN A:143 , SER A:147BINDING SITE FOR RESIDUE NAG A 505
06AC6SOFTWAREASN A:81 , ASN A:173 , NAG A:507 , FUC A:508 , TYR C:24BINDING SITE FOR RESIDUE NAG A 506
07AC7SOFTWARENAG A:506 , FUC A:508BINDING SITE FOR RESIDUE NAG A 507
08AC8SOFTWARENAG A:506 , NAG A:507BINDING SITE FOR RESIDUE FUC A 508
09AC9SOFTWARESER A:61 , ASN A:64 , ARG A:68 , TYR A:101 , HOH A:625BINDING SITE FOR RESIDUE SO4 A 509
10BC1SOFTWARETYR A:24 , ARG A:108 , ASN A:109 , FUC A:511 , NAG A:512 , HOH A:879BINDING SITE FOR RESIDUE NAG A 510
11BC2SOFTWARENAG A:510 , NAG A:512BINDING SITE FOR RESIDUE FUC A 511
12BC3SOFTWARENAG A:510 , FUC A:511BINDING SITE FOR RESIDUE NAG A 512
13BC4SOFTWARELYS A:274 , ARG A:275 , SER A:276 , HOH A:643BINDING SITE FOR RESIDUE SO4 A 513
14BC5SOFTWAREASN A:396 , HIS A:399 , NAG A:515 , FUC A:516 , HOH A:749 , HOH A:805 , HOH A:809BINDING SITE FOR RESIDUE NAG A 514
15BC6SOFTWARETRP A:419 , NAG A:514 , FUC A:516 , HOH A:754 , HOH A:973BINDING SITE FOR RESIDUE NAG A 515
16BC7SOFTWARENAG A:514 , NAG A:515BINDING SITE FOR RESIDUE FUC A 516
17BC8SOFTWAREGLN A:374 , GLN A:376 , ARG A:383BINDING SITE FOR RESIDUE SO4 A 517
18BC9SOFTWARELYS C:274 , ARG C:275 , SER C:276BINDING SITE FOR RESIDUE SO4 A 518
19CC1SOFTWAREPRO A:153 , LYS A:154 , HOH A:800BINDING SITE FOR RESIDUE EDO A 519
20CC2SOFTWAREVAL A:348 , LYS A:349 , HOH A:847BINDING SITE FOR RESIDUE EDO A 520
21CC3SOFTWAREILE A:368 , ASP A:369 , SER A:370 , ASN A:371 , HOH A:964BINDING SITE FOR RESIDUE EDO A 521
22CC4SOFTWAREARG A:397BINDING SITE FOR RESIDUE ACT A 522
23CC5SOFTWAREASP B:135 , ASP B:164 , ASN B:201 , HIS B:286 , HIS B:323 , FE B:502BINDING SITE FOR RESIDUE ZN B 501
24CC6SOFTWAREASP B:135 , ASP B:164 , TYR B:167 , HIS B:325 , ZN B:501BINDING SITE FOR RESIDUE FE B 502
25CC7SOFTWARETYR B:24 , ARG B:108 , ASN B:109 , FUC B:504BINDING SITE FOR RESIDUE NAG B 503
26CC8SOFTWARENAG B:503BINDING SITE FOR RESIDUE FUC B 504
27CC9SOFTWAREASN B:81 , ASN B:173 , TYR D:24BINDING SITE FOR RESIDUE NAG B 505
28DC1SOFTWAREMET B:11 , ASP B:16 , PHE B:140 , ASN B:143 , SER B:147BINDING SITE FOR RESIDUE NAG B 506
29DC2SOFTWARELYS B:395 , ASN B:396 , TRP B:419 , NAG B:508 , FUC B:509 , HOH B:835 , HOH B:908 , HOH B:922BINDING SITE FOR RESIDUE NAG B 507
30DC3SOFTWARETRP B:419 , NAG B:507 , FUC B:509 , HOH B:922BINDING SITE FOR RESIDUE NAG B 508
31DC4SOFTWARENAG B:507 , NAG B:508 , HOH B:751 , HOH B:773 , HOH B:922BINDING SITE FOR RESIDUE FUC B 509
32DC5SOFTWAREVAL B:273 , LYS B:274 , ARG B:275 , SER B:276BINDING SITE FOR RESIDUE GOL B 510
33DC6SOFTWAREVAL B:348 , LYS B:349 , HOH B:712 , HOH B:785BINDING SITE FOR RESIDUE SO4 B 511
34DC7SOFTWAREARG B:40 , TYR B:97 , GLN B:121BINDING SITE FOR RESIDUE SO4 B 512
35DC8SOFTWARELYS B:96 , TYR B:97BINDING SITE FOR RESIDUE SO4 B 513
36DC9SOFTWAREGLN B:374 , GLN B:376 , ARG B:383BINDING SITE FOR RESIDUE SO4 B 514
37EC1SOFTWARELYS B:67 , ARG B:113BINDING SITE FOR RESIDUE EDO B 515
38EC2SOFTWAREASN B:294 , HIS B:295 , ASP B:369 , ASN B:371 , HOH B:610 , HOH B:916BINDING SITE FOR RESIDUE EDO B 516
39EC3SOFTWARELYS B:7 , ARG B:9BINDING SITE FOR RESIDUE EDO B 517
40EC4SOFTWAREASN B:173 , GLU B:209BINDING SITE FOR RESIDUE EDO B 519
41EC5SOFTWAREARG C:113BINDING SITE FOR RESIDUE EDO C 501
42EC6SOFTWAREASN C:8 , ARG C:9BINDING SITE FOR RESIDUE SO4 C 502
43EC7SOFTWAREMET C:11 , ASP C:16 , PHE C:140 , ASN C:143 , SER C:147 , HOH C:864BINDING SITE FOR RESIDUE NAG C 503
44EC8SOFTWARETYR C:24 , ARG C:108 , ASN C:109 , FUC C:505BINDING SITE FOR RESIDUE NAG C 504
45EC9SOFTWARENAG C:504 , NAG D:506BINDING SITE FOR RESIDUE FUC C 505
46FC1SOFTWARETYR A:24 , ASP A:50 , ASN C:81 , ASN C:173BINDING SITE FOR RESIDUE NAG C 506
47FC2SOFTWAREASN C:396 , ARG C:397 , THR C:398 , HIS C:399 , NAG C:508 , FUC C:509BINDING SITE FOR RESIDUE NAG C 507
48FC3SOFTWARETRP C:419 , NAG C:507 , FUC C:509BINDING SITE FOR RESIDUE NAG C 508
49FC4SOFTWARENAG C:507 , NAG C:508BINDING SITE FOR RESIDUE FUC C 509
50FC5SOFTWAREASP C:135 , ASP C:164 , ASN C:201 , HIS C:286 , HIS C:323 , FE C:511BINDING SITE FOR RESIDUE ZN C 510
51FC6SOFTWAREASP C:135 , ASP C:164 , TYR C:167 , HIS C:325 , ZN C:510BINDING SITE FOR RESIDUE FE C 511
52FC7SOFTWARESER C:61 , ASN C:64 , ARG C:66 , ARG C:68 , LYS C:96 , TYR C:101BINDING SITE FOR RESIDUE GOL C 512
53FC8SOFTWAREGLN C:374 , GLN C:376 , ARG C:383BINDING SITE FOR RESIDUE SO4 C 513
54FC9SOFTWAREASP C:169 , ASN C:201 , HIS C:202BINDING SITE FOR RESIDUE EDO C 514
55GC1SOFTWAREASP D:135 , ASP D:164 , ASN D:201 , HIS D:286 , HIS D:323 , FE D:502BINDING SITE FOR RESIDUE ZN D 501
56GC2SOFTWAREASP D:135 , ASP D:164 , TYR D:167 , HIS D:325 , ZN D:501BINDING SITE FOR RESIDUE FE D 502
57GC3SOFTWAREMET D:372 , GLN D:374 , GLN D:376 , ARG D:383 , HOH D:728BINDING SITE FOR RESIDUE GOL D 503
58GC4SOFTWAREASP D:16 , PHE D:140 , ASN D:143 , SER D:147 , HOH D:781BINDING SITE FOR RESIDUE NAG D 504
59GC5SOFTWARETYR D:24 , ARG D:108 , ASN D:109 , NAG D:506 , FUC D:507BINDING SITE FOR RESIDUE NAG D 505
60GC6SOFTWAREFUC C:505 , NAG D:505 , FUC D:507BINDING SITE FOR RESIDUE NAG D 506
61GC7SOFTWARENAG D:505 , NAG D:506BINDING SITE FOR RESIDUE FUC D 507
62GC8SOFTWARETYR B:24 , ASP B:50 , ASN D:81 , ASN D:173BINDING SITE FOR RESIDUE NAG D 508
63GC9SOFTWARELYS D:395 , ASN D:396 , THR D:398 , NAG D:510 , FUC D:511 , HOH D:808 , HOH D:908BINDING SITE FOR RESIDUE NAG D 509
64HC1SOFTWAREHIS D:399 , TRP D:419 , NAG D:509 , FUC D:511BINDING SITE FOR RESIDUE NAG D 510
65HC2SOFTWARENAG D:509 , NAG D:510BINDING SITE FOR RESIDUE FUC D 511
66HC3SOFTWAREARG A:304 , TYR A:338 , HOH A:601 , HOH A:772 , ARG D:304 , ASN D:335 , TYR D:338 , HOH D:676BINDING SITE FOR RESIDUE GOL D 512
67HC4SOFTWAREARG D:275 , SER D:276BINDING SITE FOR RESIDUE GOL D 513
68HC5SOFTWARELYS C:313 , LYS D:313 , TYR D:314BINDING SITE FOR RESIDUE GOL D 514
69HC6SOFTWAREARG D:258 , TYR D:263 , LYS D:306 , HOH D:805BINDING SITE FOR RESIDUE SO4 D 515
70HC7SOFTWAREASP D:369 , SER D:370 , ASN D:371 , HOH D:650BINDING SITE FOR RESIDUE EDO D 516
71HC8SOFTWARESER D:54 , ARG D:108BINDING SITE FOR RESIDUE EDO D 517
72HC9SOFTWAREASP D:169 , ASN D:201 , HIS D:202 , HOH D:860BINDING SITE FOR RESIDUE EDO D 518
73IC1SOFTWARELYS D:67 , ARG D:113BINDING SITE FOR RESIDUE ACT D 519

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:345 -D:345
2B:345 -C:345

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Gln A:374 -Pro A:375
2Gly B:65 -Arg B:66
3Gln B:374 -Pro B:375
4Gln C:374 -Pro C:375
5Gln D:374 -Pro D:375

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DSY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4DSY)

(-) Exons   (0, 0)

(no "Exon" information available for 4DSY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:425
 aligned with PPAF_PHAVU | P80366 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:425
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453     
           PPAF_PHAVU    34 KNRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDS 458
               SCOP domains d4dsya1 A:7-120 automated matches                                                                                 d4dsya2 A:121-431 automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh........eeeeeee.......eeeeeee........eeeee......eee..eee..ee..ee..eeeeeee.......eeeeee......eeeeee..........eeeeee.....hhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhhhhhhhhhhh...eee..hhhhh..hhhhh....hhhhhhhh..hhhhhh......eeeee..eeeee..........hhhhhhhhhhhhhh......eeeee...............hhhhhhhhhhhhhhh...eeee.....eeee..ee.............ee.....eeeee....................eeeee...eeeeeee....eeeeeeee.........eeeeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dsy A   7 KNRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDS 431
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426     


Chain B from PDB  Type:PROTEIN  Length:426
 aligned with PPAF_PHAVU | P80366 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:426
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453      
           PPAF_PHAVU    34 KNRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST 459
               SCOP domains d4dsyb1 B:7-120 automated matches                                                                                 d4dsyb2 B:121-432 automated matches                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhh........eeeeeee.......eeeeeee.......eeeeee......eeee.eee..ee..ee..eeeeeee.......eeeeee......eeeeee..........eeeeee.....hhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhhhhhhhhhhhhhh...eee..hhhhhh.hhhhh....hhhhhhhh..hhhhhh......eeeee..eeeee..........hhhhhhhhhhhhhh......eeeee...............hhhhhhhhhhhhhhh...eeee.....eeee..ee.............ee.....eeeee....................eeeee...eeeeeee....eeeeeeee.........eeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4dsy B   7 KNRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST 432
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426      


Chain C from PDB  Type:PROTEIN  Length:423
 aligned with PPAF_PHAVU | P80366 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:423
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454   
           PPAF_PHAVU    35 NRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDD 457
               SCOP domains d4dsyc1 C:8-120 automated matches                                                                                d4dsyc2 C:121-430 automated matches                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh........eeeeeee.......eeeeeee.......eeeeee......eeee.eee..ee..ee..eeeeeee.......eeeeee......eeeeee..........eeeeee.....hhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhhhhhhhhhhh...eee..hhhhhh.hhhhh....hhhhhhhh..hhhhhh......eeeee..eeeee..........hhhhhhhhhhhhh.......eeeee...............hhhhhhhhhhhhhhh...eeee.....eeee..ee.............ee.....eeeee....................eeeee...eeeeeee....eeeeeeee.........eeeeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dsy C   8 NRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDD 430
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427   


Chain D from PDB  Type:PROTEIN  Length:426
 aligned with PPAF_PHAVU | P80366 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:426
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453      
           PPAF_PHAVU    34 KNRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST 459
               SCOP domains d4dsyd1 D:7-120 automated matches                                                                                 d4dsyd2 D:121-432 automated matches                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhh........eeeeeee.......eeeeeee.......eeeeee......eeee.eee..ee..ee..eeeeeee.......eeeeee......eeeeee..........eeeeee.....hhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhhhhhhhhhhh......eee..hhhhh..hhhhh....hhhhhhhh..hhhhhh......eeeee..eeeee..........hhhhhhhhhhhhh.......eeeee...............hhhhhhhhhhhhhhh...eeee.....eeee..ee.............ee.....eeeee....................eeeee...eeeeeee....eeeeeeee.........eeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4dsy D   7 KNRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST 432
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DSY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DSY)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (PPAF_PHAVU | P80366)
molecular function
    GO:0003993    acid phosphatase activity    Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum.
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  4dsy
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  PPAF_PHAVU | P80366
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PPAF_PHAVU | P80366: 1kbp 2qfp 2qfr 3kbp 4dhl 4dt2 4kbp 4kkz

(-) Related Entries Specified in the PDB File

4dhl SAME ENZYME, CRYSTAL FORM, SPACE GROUP BUT DIFFERENT INHIBITOR