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(-) Description

Title :  CRYSTAL STRUCTURE OF RED KIDNEY BEAN PURPLE ACID PHOSPHATASE IN COMPLEX WITH MAYBRIDGE FRAGMENT MO07123
 
Authors :  D. Feder, D. J. Clayton, W. M. Hussein, G. Schenk, R. Mcgeary, L. W. Gudda
Date :  29 Jan 12  (Deposition) - 12 Dec 12  (Release) - 02 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Catalytic C Domain, N Terminal Domain, Phosphatase, Acid Phosphatase, Phosphoric Monoester Hydrolases, Hydrolase, Mo07123, Maybridge, Fragment, Lysosome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Feder, W. M. Hussein, D. J. Clayton, M. W. Kan, G. Schenk, R. P. Mcgeary, L. W. Guddat
Identification Of Purple Acid Phosphatase Inhibitors By Fragment-Based Screening: Promising New Leads For Osteoporosis Therapeutics.
Chem. Biol. Drug Des. V. 80 665 2012
PubMed-ID: 22943065  |  Reference-DOI: 10.1111/CBDD.12001

(-) Compounds

Molecule 1 - PURPLE ACID PHOSPHATASE
    Chains: A, B, D, C
    EC Number: 3.1.3.2
    Organism Common: FRENCH BEAN,KIDNEY BEAN,STRING BEAN
    Organism Scientific: PHASEOLUS VULGARIS
    Organism Taxid: 3885

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 57)

Asymmetric Unit (8, 57)
No.NameCountTypeFull Name
10K74Ligand/Ion2-(4-METHYLPHENYL)-1,3-THIAZOLE-4-CARBOXYLIC ACID
2EDO6Ligand/Ion1,2-ETHANEDIOL
3FE4Ligand/IonFE (III) ION
4FUC9Ligand/IonALPHA-L-FUCOSE
5GOL3Ligand/IonGLYCEROL
6NAG22Ligand/IonN-ACETYL-D-GLUCOSAMINE
7SO45Ligand/IonSULFATE ION
8ZN4Ligand/IonZINC ION
Biological Unit 1 (6, 30)
No.NameCountTypeFull Name
10K72Ligand/Ion2-(4-METHYLPHENYL)-1,3-THIAZOLE-4-CARBOXYLIC ACID
2EDO6Ligand/Ion1,2-ETHANEDIOL
3FE-1Ligand/IonFE (III) ION
4FUC5Ligand/IonALPHA-L-FUCOSE
5GOL2Ligand/IonGLYCEROL
6NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE
7SO43Ligand/IonSULFATE ION
8ZN-1Ligand/IonZINC ION
Biological Unit 2 (5, 19)
No.NameCountTypeFull Name
10K72Ligand/Ion2-(4-METHYLPHENYL)-1,3-THIAZOLE-4-CARBOXYLIC ACID
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3FE-1Ligand/IonFE (III) ION
4FUC4Ligand/IonALPHA-L-FUCOSE
5GOL1Ligand/IonGLYCEROL
6NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE
7SO42Ligand/IonSULFATE ION
8ZN-1Ligand/IonZINC ION

(-) Sites  (57, 57)

Asymmetric Unit (57, 57)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:135 , ASP A:164 , ASN A:201 , HIS A:286 , HIS A:323 , FE A:502 , 0K7 A:503BINDING SITE FOR RESIDUE ZN A 501
02AC2SOFTWAREASP A:135 , ASP A:164 , TYR A:167 , HIS A:325 , ZN A:501 , 0K7 A:503BINDING SITE FOR RESIDUE FE A 502
03AC3SOFTWAREASP A:164 , TYR A:167 , ASN A:201 , HIS A:202 , HIS A:295 , HIS A:296 , HIS A:323 , HIS A:325 , TYR A:365 , ZN A:501 , FE A:502 , HOH A:937 , ARG D:258BINDING SITE FOR RESIDUE 0K7 A 503
04AC4SOFTWARETHR A:305 , ASN A:335 , ILE A:336 , ALA A:337 , TYR A:338 , HOH A:640 , HOH A:976 , HOH D:602BINDING SITE FOR RESIDUE GOL A 504
05AC5SOFTWARESER A:61 , ASN A:64 , ARG A:68 , LYS A:96 , TYR A:101 , HOH A:666BINDING SITE FOR RESIDUE SO4 A 505
06AC6SOFTWARELYS A:274 , ARG A:275 , SER A:276 , HOH A:712 , GLN D:374BINDING SITE FOR RESIDUE SO4 A 506
07AC7SOFTWAREPRO A:153 , LYS A:154 , HOH A:690 , HOH A:922 , HOH A:987 , PRO B:427BINDING SITE FOR RESIDUE EDO A 507
08AC8SOFTWAREASP A:16 , PHE A:140 , ASN A:143 , SER A:147BINDING SITE FOR RESIDUE NAG A 508
09AC9SOFTWAREASN A:81 , ASN A:173 , NAG A:510 , FUC A:511 , HOH A:932 , TYR C:24 , ASP C:50BINDING SITE FOR RESIDUE NAG A 509
10BC1SOFTWARENAG A:509BINDING SITE FOR RESIDUE NAG A 510
11BC2SOFTWARENAG A:509BINDING SITE FOR RESIDUE FUC A 511
12BC3SOFTWARETYR A:24 , ARG A:108 , ASN A:109 , FUC A:513 , NAG A:514 , HOH A:807BINDING SITE FOR RESIDUE NAG A 512
13BC4SOFTWARENAG A:512 , NAG A:514BINDING SITE FOR RESIDUE FUC A 513
14BC5SOFTWARENAG A:512 , FUC A:513BINDING SITE FOR RESIDUE NAG A 514
15BC6SOFTWAREASN A:396 , HIS A:399 , NAG A:516 , FUC A:517 , HOH A:857 , HOH A:991BINDING SITE FOR RESIDUE NAG A 515
16BC7SOFTWARETRP A:419 , NAG A:515 , FUC A:517 , HOH A:892 , HOH A:897BINDING SITE FOR RESIDUE NAG A 516
17BC8SOFTWARENAG A:515 , NAG A:516BINDING SITE FOR RESIDUE FUC A 517
18BC9SOFTWAREASP B:164 , ASN B:201 , HIS B:286 , HIS B:323 , FE B:502 , 0K7 B:503BINDING SITE FOR RESIDUE ZN B 501
19CC1SOFTWAREASP B:135 , ASP B:164 , TYR B:167 , HIS B:325 , ZN B:501 , 0K7 B:503BINDING SITE FOR RESIDUE FE B 502
20CC2SOFTWAREASP B:164 , ASN B:201 , HIS B:202 , HIS B:296 , HIS B:323 , HIS B:325 , TYR B:365 , ZN B:501 , FE B:502 , ARG C:258 , HOH C:601BINDING SITE FOR RESIDUE 0K7 B 503
21CC3SOFTWARETYR B:24 , ARG B:108 , ASN B:109 , FUC B:505BINDING SITE FOR RESIDUE NAG B 504
22CC4SOFTWARENAG B:504BINDING SITE FOR RESIDUE FUC B 505
23CC5SOFTWARELYS B:274 , ARG B:275 , SER B:276 , HOH B:971BINDING SITE FOR RESIDUE SO4 B 506
24CC6SOFTWAREASN B:81 , ASN B:173 , HOH B:764 , TYR D:24 , ASP D:50BINDING SITE FOR RESIDUE NAG B 507
25CC7SOFTWAREASP B:16 , ASN B:143 , SER B:147BINDING SITE FOR RESIDUE NAG B 508
26CC8SOFTWARELYS B:395 , ASN B:396 , HIS B:399 , NAG B:510 , FUC B:511 , HOH B:676 , HOH B:785 , HOH B:916BINDING SITE FOR RESIDUE NAG B 509
27CC9SOFTWARETRP B:419 , NAG B:509 , FUC B:511 , HOH B:785 , HOH B:937BINDING SITE FOR RESIDUE NAG B 510
28DC1SOFTWARENAG B:509 , NAG B:510 , HOH B:934BINDING SITE FOR RESIDUE FUC B 511
29DC2SOFTWAREASP D:135 , ASP D:164 , ASN D:201 , HIS D:286 , HIS D:323 , FE D:502 , 0K7 D:503BINDING SITE FOR RESIDUE ZN D 501
30DC3SOFTWAREASP D:135 , ASP D:164 , TYR D:167 , HIS D:325 , ZN D:501 , 0K7 D:503BINDING SITE FOR RESIDUE FE D 502
31DC4SOFTWAREASP D:164 , ASN D:201 , HIS D:202 , HIS D:296 , HIS D:323 , HIS D:325 , TYR D:365 , ZN D:501 , FE D:502 , HOH D:977BINDING SITE FOR RESIDUE 0K7 D 503
32DC5SOFTWARELYS C:313 , TYR D:314 , HOH D:975 , HOH D:976BINDING SITE FOR RESIDUE GOL D 504
33DC6SOFTWARELYS D:274 , ARG D:275 , SER D:276BINDING SITE FOR RESIDUE SO4 D 505
34DC7SOFTWAREHOH A:999 , THR D:305 , ASN D:335 , ILE D:336 , TYR D:338 , EDO D:508BINDING SITE FOR RESIDUE EDO D 506
35DC8SOFTWAREASP D:169 , ASN D:201 , HIS D:202BINDING SITE FOR RESIDUE EDO D 507
36DC9SOFTWARETYR A:338 , HOH A:999 , ARG D:304 , ASN D:335 , TYR D:338 , EDO D:506BINDING SITE FOR RESIDUE EDO D 508
37EC1SOFTWAREASP D:16 , PHE D:140 , ASN D:143 , SER D:147 , HOH D:695 , HOH D:745BINDING SITE FOR RESIDUE NAG D 509
38EC2SOFTWARETYR D:171 , ASN D:173 , HIS D:174 , GLU D:209BINDING SITE FOR RESIDUE EDO D 510
39EC3SOFTWARESER D:220 , TYR D:221 , HIS D:224 , HOH D:771 , HOH D:835BINDING SITE FOR RESIDUE EDO D 511
40EC4SOFTWAREGLN B:374 , ASN D:396 , ARG D:397 , THR D:398 , HIS D:399 , NAG D:513 , FUC D:514BINDING SITE FOR RESIDUE NAG D 512
41EC5SOFTWARETRP D:419 , NAG D:512 , FUC D:514 , HOH D:891 , HOH D:951BINDING SITE FOR RESIDUE NAG D 513
42EC6SOFTWARENAG D:512 , NAG D:513BINDING SITE FOR RESIDUE FUC D 514
43EC7SOFTWARETYR D:24 , ARG D:108 , ASN D:109 , FUC D:516BINDING SITE FOR RESIDUE NAG D 515
44EC8SOFTWAREFUC C:507 , NAG D:515BINDING SITE FOR RESIDUE FUC D 516
45EC9SOFTWARETYR B:24 , ASP B:50 , ASN D:81 , ASN D:173BINDING SITE FOR RESIDUE NAG D 517
46FC1SOFTWAREASP C:164 , ASN C:201 , HIS C:286 , HIS C:323 , FE C:502 , 0K7 C:503BINDING SITE FOR RESIDUE ZN C 501
47FC2SOFTWAREASP C:135 , ASP C:164 , TYR C:167 , HIS C:325 , ZN C:501 , 0K7 C:503BINDING SITE FOR RESIDUE FE C 502
48FC3SOFTWAREARG B:258 , ASP C:135 , ASP C:164 , ASN C:201 , HIS C:202 , HIS C:295 , HIS C:296 , HIS C:323 , HIS C:325 , TYR C:365 , ZN C:501 , FE C:502BINDING SITE FOR RESIDUE 0K7 C 503
49FC4SOFTWAREMET B:298 , HOH B:657 , THR C:305 , ASN C:335 , ILE C:336 , ALA C:337 , TYR C:338 , HOH C:651 , HOH C:652 , HOH C:976BINDING SITE FOR RESIDUE GOL C 504
50FC5SOFTWARELYS C:67 , ARG C:113BINDING SITE FOR RESIDUE SO4 C 505
51FC6SOFTWARETYR C:24 , ARG C:108 , ASN C:109 , FUC C:507BINDING SITE FOR RESIDUE NAG C 506
52FC7SOFTWARENAG C:506 , FUC D:516BINDING SITE FOR RESIDUE FUC C 507
53FC8SOFTWARETYR A:24 , ASP A:50 , ASN C:81BINDING SITE FOR RESIDUE NAG C 508
54FC9SOFTWAREASN C:396 , THR C:398 , HIS C:399 , NAG C:510 , FUC C:511 , HOH C:876BINDING SITE FOR RESIDUE NAG C 509
55GC1SOFTWARETRP C:419 , NAG C:509 , FUC C:511 , HOH C:814 , HOH C:982BINDING SITE FOR RESIDUE NAG C 510
56GC2SOFTWARENAG C:509 , NAG C:510BINDING SITE FOR RESIDUE FUC C 511
57GC3SOFTWAREASP C:16 , ASN C:143 , SER C:147 , HOH C:846BINDING SITE FOR RESIDUE NAG C 512

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:345 -D:345
2B:345 -C:345

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gln A:374 -Pro A:375
2Gln B:374 -Pro B:375
3Gln D:374 -Pro D:375
4Gln C:374 -Pro C:375

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DHL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4DHL)

(-) Exons   (0, 0)

(no "Exon" information available for 4DHL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:424
 aligned with PPAF_PHAVU | P80366 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:424
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454    
           PPAF_PHAVU    35 NRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDS 458
               SCOP domains d4dhla1 A:8-120 automated matches                                                                                d4dhla2 A:121-431 automated matches                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh........eeeeeee.......eeeeeee.......eeeeee......eeee.eee..ee..ee..eeeeeee.......eeeeee......eeeeee..........eeeeee.....hhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhhhhhhhhhhhhhh...eee..hhhhhh.hhhhh....hhhhhhhh..hhhhhh......eeeee..eeeee..........hhhhhhhhhhhhhh......eeeee...............hhhhhhhhhhhhhhh...eeee.....eeeeeeee.............ee.....eeeee....................eeeee...eeeeeee....eeeeeeee.........eeeeee.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dhl A   8 NRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDS 431
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427    


Chain B from PDB  Type:PROTEIN  Length:425
 aligned with PPAF_PHAVU | P80366 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:425
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454     
           PPAF_PHAVU    35 NRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST 459
               SCOP domains d4dhlb1 B:8-120 automated matches                                                                                d4dhlb2 B:121-432 automated matches                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh........eeeeeee.......eeeeeee........eeeee......eee..eee..ee..ee..eeeeeee.......eeeeee......eeeeee..........eeeeee.....hhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhhhhhhhhhhhhhh...eee..hhhhh..hhhhh....hhhhhhhh..hhhhhh......eeeee..eeeee..........hhhhhhhhhhhhhh......eeeee...............hhhhhhhhhhhhhhh...eeee.....eeee..ee.............ee.....eeeee....................eeeee...eeeeeee....eeeeeeee.........eeeeee........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dhl B   8 NRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST 432
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427     


Chain C from PDB  Type:PROTEIN  Length:424
 aligned with PPAF_PHAVU | P80366 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:424
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453    
           PPAF_PHAVU    34 KNRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDD 457
               SCOP domains d4dhlc1 C:7-120 automated matches                                                                                 d4dhlc2 C:121-430 automated matches                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh........eeeeeee.......eeeeeee........eeeee......eee..eee..ee..ee..eeeeeee.......eeeeee......eeeeee..........eeeeee.....hhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhhhhhhhhhhh...eee..hhhhhh.hhhhh....hhhhhhhh..hhhhhh......eeeee..eeeee..........hhhhhhhhhhhhhh......eeeee...............hhhhhhhhhhhhhhh...eeee.....eeee..ee.............ee.....eeeee....................eeeee...eeeeeee....eeeeeeee.........eeeeee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dhl C   7 KNRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDD 430
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426    


Chain D from PDB  Type:PROTEIN  Length:423
 aligned with PPAF_PHAVU | P80366 from UniProtKB/Swiss-Prot  Length:459

    Alignment length:423
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454   
           PPAF_PHAVU    35 NRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDD 457
               SCOP domains d4dhld1 D:8-120 automated matches                                                                                d4dhld2 D:121-430 automated matches                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh........eeeeeee.......eeeeeee........eeeee......eee..eee..ee..ee..eeeeeee.......eeeeee......eeeeee..........eeeeee.....hhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhhhhhhhhhhh...eee..hhhhh..hhhhh....hhhhhhhh..hhhhhh......eeeee..eeeee..........hhhhhhhhhhhhhh......eeeee...............hhhhhhhhhhhhhhh...eeee.....eeee..ee.............ee.....eeeee....................eeeee...eeeeeee....eeeeeeee.........eeeeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dhl D   8 NRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDD 430
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DHL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DHL)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (PPAF_PHAVU | P80366)
molecular function
    GO:0003993    acid phosphatase activity    Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum.
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  4dhl
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  PPAF_PHAVU | P80366
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PPAF_PHAVU | P80366: 1kbp 2qfp 2qfr 3kbp 4dsy 4dt2 4kbp 4kkz

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4DHL)